Sesame LIMS - Revision history

Shawndouglas: Made discontiued

2024-01-05T00:42:30Z

Made discontiued

← Older revision		Revision as of 00:42, 5 January 2024
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	\| developer = University of Wisconsin-Madison		\| developer = University of Wisconsin-Madison
	\| released = {{Start date\|2000\|03\|20}}<ref name="SesFirst">{{cite web \|url=http://www.sesame.wisc.edu/sesame_releasenotes.html \|title=Sesame - Release Notes \|publisher=University of Wisconsin-Madison \|accessdate=25 September 2013}}</ref><ref name="SesFirstArch">{{cite web \|archiveurl=http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html \|url=http://www.sesame.wisc.edu/sesame_news.html \|title=Sesame - News \|publisher=University of Wisconsin-Madison \|archivedate=03 August 2003 \|accessdate=25 September 2013}}</ref>		\| released = {{Start date\|2000\|03\|20}}<ref name="SesFirst">{{cite web \|url=http://www.sesame.wisc.edu/sesame_releasenotes.html \|title=Sesame - Release Notes \|publisher=University of Wisconsin-Madison \|accessdate=25 September 2013}}</ref><ref name="SesFirstArch">{{cite web \|archiveurl=http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html \|url=http://www.sesame.wisc.edu/sesame_news.html \|title=Sesame - News \|publisher=University of Wisconsin-Madison \|archivedate=03 August 2003 \|accessdate=25 September 2013}}</ref>
	\| discontinued =		\| discontinued = 30 September 2012<ref name="USDASesame" />
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = Java		\| programming language = Java
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	}}		}}

	'''Sesame LIMS''' is a free [[laboratory information management system]] (LIMS) solution that "supports the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instrumentation, and software packages."<ref name="SLHome">{{cite web \|url=http://www.sesame.wisc.edu/sesame_home.html \|title=Sesame LIMS \|publisher=University of Wisconsin-Madison \|accessdate=~~25 September 2013~~}}</ref>		'''Sesame LIMS''' was a free [[laboratory information management system]] (LIMS) solution that "supports the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instrumentation, and software packages."<ref name="SLHome">{{cite web \|url=http://www.sesame.wisc.edu/sesame_home.html \|archiveurl=https://web.archive.org/web/20200212082501/http://www.sesame.wisc.edu/sesame_home.html \|title=Sesame LIMS \|publisher=University of Wisconsin-Madison \|archivedate=12 February 2020 \|accessdate=04 January 2024}}</ref>

	==Product history==		==Product history==
			Sesame LIMS was based on a project designed by John Markley and Eldon Ulrich of the University of Wisconsin-Madison Biochemistry Department in 1997 for the development of a "Computerized Desk-Top Management System for Biomolecular NMR."<ref name="SesHist">{{cite web \|url=http://www.sesame.wisc.edu/sesame_history.html \|title=Sesame - History \|publisher=University of Wisconsin-Madison \|accessdate=25 September 2013}}</ref> The tools weren't able to sufficiently provide reliable results in the laboratory, and with demand for better biomolecular data management still high, developer Zsolt Zolnai led an effort in 1999 to create a new system: Sesame. With the help of special funding, Zolnai and others began work on a client-server computing infrastructure "to assist in managing and linking individual steps in a biomolecular NMR project and to allow remote collaborations and/or expert help at various stages."<ref name="Ses00Paper">{{cite web \|archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame.pdf \|url=http://www.sesame.wisc.edu/sesame.pdf \|format=PDF \|title=SESAME: an Experiment Management System for Biomolecular NMR \|author=Lee, Peter T.; Li, Jing; Chapman, Michael R.; Volkman, Brian F.; Chae, Young Kee; Markley, John L.; Zolnai, Zsolt \|publisher=University of Wisconsin-Madison \|date=09 April 2000 \|archivedate=31 March 2004 \|accessdate=25 September 2013}}</ref><ref name="Ses00PaperOrigin">{{cite web \|archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame_misc.html \|url=http://www.sesame.wisc.edu/sesame_misc.html \|title=More About Seasame \|publisher=University of Wisconsin-Madison \|archivedate=31 March 2004 \|accessdate=25 September 2013}}</ref> The first usable structures became available on March 20, 2000<ref name="SesFirst" /><ref name="SesFirstArch" />, and the system was presented at the 41st Experimental NMR Conference in Asilomar, California on April 9–14.<ref name="Ses00PaperOrigin" /> Throughout the decade, additional modules were added as web-based Java applet-applications useful to researchers working in structural genomics, structural biology, and metabolomics.<ref name="SesFirst" /> The application was able to be used online via the university's hosted instance or installed as a private instance.<ref name="SLHome" />

	~~Sesame LIMS is based on a project designed by John Markley and Eldon Ulrich of~~ the ~~University of Wisconsin-Madison Biochemistry Department in 1997 for the development of a "Computerized Desk-Top Management System for Biomolecular NMR~~.~~"<ref name="SesHist">{{cite web \|url=http://www~~.~~sesame.wisc.edu/sesame_history.html \|title=Sesame - History \|publisher=University~~ of ~~Wisconsin-Madison \|accessdate=25 September 2013}}</ref> The tools weren't able to sufficiently provide reliable results in~~ the ~~laboratory, and with demand for better biomolecular data management still high, developer Zsolt Zolnai led an effort in 1999 to create a new system:~~ Sesame~~. With the help of special funding~~, Zolnai and others began work on a client-server computing infrastructure "to assist in managing and linking individual steps in a biomolecular NMR project and to allow remote collaborations and/or expert help at various stages."<ref name="~~Ses00Paper~~">{{cite web \|~~archiveurl~~=~~http~~://~~web~~.~~archive~~.~~org~~/web/~~20040331043530~~/~~http://www.~~sesame.~~wisc.edu/sesame.pdf~~ \|~~url~~=~~http://www.sesame.wisc.edu/sesame.pdf~~ \|~~format~~=~~PDF \|title=SESAME: an Experiment Management~~ System ~~for Biomolecular NMR~~ \|~~author~~=~~Lee, Peter T.; Li, Jing; Chapman, Michael R~~.~~; Volkman, Brian F~~.~~; Chae, Young Kee; Markley, John L.; Zolnai, Zsolt \|publisher=University~~ of ~~Wisconsin-Madison~~ \|date=~~09 April 2000 \|archivedate=31 March 2004 \|accessdate=25~~ September 2013}}</ref><ref name="Ses00PaperOrigin">{{cite web \|archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame_misc.html \|url=http://www.sesame.wisc.edu/sesame_misc.html \|title=More About Seasame \|publisher=University of Wisconsin-Madison \|archivedate=31 March 2004 \|accessdate=~~25 September 2013~~}}</ref> The first usable structures became available on March 20, 2000<ref name="SesFirst" /><ref name="SesFirstArch" />, and the system was presented at the 41st Experimental NMR Conference in Asilomar, California on April 9–14.<ref name="Ses00PaperOrigin" /> Throughout the decade, additional modules were added as web-based Java applet-applications useful to researchers working in structural genomics, structural biology, and metabolomics.<ref name="SesFirst" /> Today the application can be used online via the university's hosted instance or installed as a private instance.<ref name="SLHome" />		According to the U.S. Department of Agriculture, the Sesame LIMS project was dicontinued on September 30, 2012.<ref name="USDASesame">{{cite web \|url=https://reeis.usda.gov/web/crisprojectpages/0213000-sesame-lims.html \|title=Sesame LIMS \|work=Research, Education & Economics Information System \|publisher=U.S. Department of Agriculture \|date=30 September 2012 \|accessdate=04 January 2024}}</ref>

	==Features==		==Features==

	The current modules ~~are~~<ref name="SLHome" />:		The current modules were<ref name="SLHome" />:

	* Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more		* Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more
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	==Hardware/software requirements==		==Hardware/software requirements==

	Installation requirements, files, and instructions ~~are~~ listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page].		Installation requirements, files, and instructions were listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page].

	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==

	Demonstration videos ~~can be~~ found on both [http://www.sesame.wisc.edu/sesame_videos.html the Sesame site] and [http://www.youtube.com/user/SesameLIMS YouTube].		Demonstration videos were found on both [http://www.sesame.wisc.edu/sesame_videos.html the Sesame site] and [http://www.youtube.com/user/SesameLIMS YouTube].

	Online help guides ~~are~~ [http://www.sesame.wisc.edu/sesame_helppages.html also available].		Online help guides were [http://www.sesame.wisc.edu/sesame_helppages.html also available].

	==Entities using Sesame LIMS==		==Entities using Sesame LIMS==

	==Further reading==		==Further reading==

	* {{cite journal \|url=http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf \|format=PDF \|title=Project management system for structural and functional proteomics: Sesame \|journal=Journal of Structural and Functional Genomics \|author=Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. \|date=January 2003 \|volume=4 \|issue=1 \|pages=11–23 \|doi=10.1023/A:1024684404761}}		* {{cite journal \|url=http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf \|format=PDF \|title=Project management system for structural and functional proteomics: Sesame \|journal=Journal of Structural and Functional Genomics \|author=Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. \|date=January 2003 \|volume=4 \|issue=1 \|pages=11–23 \|doi=10.1023/A:1024684404761}}

	==External links==		==External links==

			<br />
	==References==		==References==
	<references />		<references />

	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:~~Laboratory informatics~~ software ~~(open source)]]~~		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Laboratory information management systems~~ (open source)]]

Shawndouglas: /* Hardware/software requirements */ Text

2013-09-25T23:00:39Z

Hardware/software requirements: Text

← Older revision		Revision as of 23:00, 25 September 2013
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	==Hardware/software requirements==		==Hardware/software requirements==

	Installation requirements and instructions are listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page].		Installation requirements, files, and instructions are listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page].

	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==

Shawndouglas: Created new record.

2013-09-25T22:58:25Z

Created new record.

New page

{{Infobox software
| name = Sesame LIMS
| title = Sesame LIMS
| logo = [[Image:SesameLIMS_logo.jpg‎]]
| screenshot = 
| caption =
| collapsible =
| author = Zsolt Zolnai
| developer = University of Wisconsin-Madison
| released = {{Start date|2000|03|20}}<ref name="SesFirst">{{cite web |url=http://www.sesame.wisc.edu/sesame_releasenotes.html |title=Sesame - Release Notes |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref><ref name="SesFirstArch">{{cite web |archiveurl=http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html |url=http://www.sesame.wisc.edu/sesame_news.html |title=Sesame - News |publisher=University of Wisconsin-Madison |archivedate=03 August 2003 |accessdate=25 September 2013}}</ref>
| discontinued =
| frequently updated = yes
| programming language = Java
| operating system = Cross-platform
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = [http://www.sesame.wisc.edu/sesame_disclaimer.html Proprietary license]
| website = [http://www.sesame.wisc.edu/ sesame.wisc.edu]
}}

'''Sesame LIMS''' is a free [[laboratory information management system]] (LIMS) solution that "supports the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instrumentation, and software packages."<ref name="SLHome">{{cite web |url=http://www.sesame.wisc.edu/sesame_home.html |title=Sesame LIMS |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref>

==Product history==

Sesame LIMS is based on a project designed by John Markley and Eldon Ulrich of the University of Wisconsin-Madison Biochemistry Department in 1997 for the development of a "Computerized Desk-Top Management System for Biomolecular NMR."<ref name="SesHist">{{cite web |url=http://www.sesame.wisc.edu/sesame_history.html |title=Sesame - History |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref> The tools weren't able to sufficiently provide reliable results in the laboratory, and with demand for better biomolecular data management still high, developer Zsolt Zolnai led an effort in 1999 to create a new system: Sesame. With the help of special funding, Zolnai and others began work on a client-server computing infrastructure "to assist in managing and linking individual steps in a biomolecular NMR project and to allow remote collaborations and/or expert help at various stages."<ref name="Ses00Paper">{{cite web |archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame.pdf |url=http://www.sesame.wisc.edu/sesame.pdf |format=PDF |title=SESAME: an Experiment Management System for Biomolecular NMR |author=Lee, Peter T.; Li, Jing; Chapman, Michael R.; Volkman, Brian F.; Chae, Young Kee; Markley, John L.; Zolnai, Zsolt |publisher=University of Wisconsin-Madison |date=09 April 2000 |archivedate=31 March 2004 |accessdate=25 September 2013}}</ref><ref name="Ses00PaperOrigin">{{cite web |archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame_misc.html |url=http://www.sesame.wisc.edu/sesame_misc.html |title=More About Seasame |publisher=University of Wisconsin-Madison |archivedate=31 March 2004 |accessdate=25 September 2013}}</ref> The first usable structures became available on March 20, 2000<ref name="SesFirst" /><ref name="SesFirstArch" />, and the system was presented at the 41st Experimental NMR Conference in Asilomar, California on April 9–14.<ref name="Ses00PaperOrigin" /> Throughout the decade, additional modules were added as web-based Java applet-applications useful to researchers working in structural genomics, structural biology, and metabolomics.<ref name="SesFirst" /> Today the application can be used online via the university's hosted instance or installed as a private instance.<ref name="SLHome" />

==Features==

The current modules are<ref name="SLHome" />:

* Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more
* Sundial: for [[spectrometer]] schedules and time requests
* Lamp: for metabolomics
* Jar: for target requests
* Well: for crystallization, cryo-EM, and NMR screens
* Camel: for NMR
* Rukh: for Y2H screens and requests, V screens, and C screens
* Bazaar: for lab administration
* Jafar: for the TargetTrack browser

==Hardware/software requirements==

Installation requirements and instructions are listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page].

==Videos, screenshots, and other media==

Demonstration videos can be found on both [http://www.sesame.wisc.edu/sesame_videos.html the Sesame site] and [http://www.youtube.com/user/SesameLIMS YouTube].

Online help guides are [http://www.sesame.wisc.edu/sesame_helppages.html also available].

==Entities using Sesame LIMS==

==Further reading==

* {{cite journal |url=http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf |format=PDF |title=Project management system for structural and functional proteomics: Sesame |journal=Journal of Structural and Functional Genomics |author=Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. |date=January 2003 |volume=4 |issue=1 |pages=11–23 |doi=10.1023/A:1024684404761}}

==External links==

==References==
<references />


[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]