Difference between revisions of "Book:The Complete Guide to LIMS and Laboratory Informatics"

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== The Complete Guide to LIMS & Laboratory Informatics: 2019 Edition ==
'''Title''': ''The Complete Guide to LIMS and Laboratory Informatics''
;1. About the Content of This Guide
 
:[[LIMSwiki mission]]
'''Edition''': 2024 Edition
;2. Introduction to Informatics in the Laboratory
 
'''Author for citation''': Shawn E. Douglas
 
'''License for content''': [https://creativecommons.org/licenses/by-sa/4.0/ Creative Commons Attribution-ShareAlike 4.0 International]
 
'''Publication date''': January 2024
 
 
[[Laboratory informatics]] solutions are as unique as the [[Laboratory|laboratories]] that depend on them, coming in many "flavors." Sorting through this great variety of systems can be a daunting task. Add in the fact that many laboratories don't have the personnel who understand every nuance of laboratory informatics and the [[laboratory information management system]] (LIMS) or [[laboratory information system]] (LIS) they require, and it quickly becomes obvious that finding the ideal LIMS is no simple task.
 
This annually updated guide provides a comprehensive and informative body of knowledge as it relates to the laboratory and implementing informatics solutions within it. From the software, hardware, and data management side of laboratory informatics to considerations towards security, acquisition, and implementation of the ideal solution, the reader is provided with a wealth of knowledge to better guide their LIMS and laboratory informatics decisions.
 
;1. Informatics in the laboratory
:[[Information]]
:[[Information]]
:[[Informatics (academic field)]]
:[[Informatics (academic field)]]
:[[Laboratory]]
:[[Laboratory]]
:[[Laboratory informatics]]
:[[Laboratory informatics]]
;3. Informatics Across Several Industries
;2. Informatics across the sciences
:[[Biodiversity informatics]]
:[[Bioinformatics]]
:[[Bioinformatics]]
:[[Cancer informatics]]
:[[Cancer informatics]]
:[[Chemical informatics]]
:[[Chemical informatics]]
:[[Environmental informatics]]
:[[Environmental informatics]]
:[[Evolutionary informatics]]
:[[Genome informatics]]
:[[Geoinformatics]]
:[[Health informatics]]
:[[Health informatics]]
:[[Hydroinformatics]]
:[[Imaging informatics]]
:[[Imaging informatics]]
:[[Infectious disease informatics]]
:[[Materials informatics]]
:[[Public health informatics]]
:[[Public health informatics]]
;4. All about LIMS and LIS
;3. All about LIMS and LIS
:[[Laboratory information management system]]
:[[Laboratory information management system]]
:[[LIMS feature]]
:[[LIMS feature]]
:[[Laboratory information system]]
:[[Laboratory information system]]
:[[LIS feature]]
:[[LIS feature]]
;5. Other Laboratory Informatics and Related Applications
;4. Other laboratory informatics and support applications
:[[Chromatography data system]]
:[[Document management system]]
:[[Document management system]]
:[[Chromatography data management system]]
:[[Electronic data capture|Electronic data capture system]]
:[[Electronic data capture|Electronic data capture system]]
:[[Electronic health record]]
:[[Electronic laboratory notebook]]
:[[Electronic laboratory notebook]]
:[[Enterprise resource planning|Enterprise resource planning system]]
:[[Enterprise resource planning|Enterprise resource planning system]]
:[[Laboratory execution system]]
:[[Laboratory execution system]]
:[[Picture archiving and communication system]]
:[[Radiology information system]]
:[[Scientific data management system]]
:[[Scientific data management system]]
;6. Laboratory Informatics Considerations - Software and Hardware
:[[Workflow engine]]
;5. Laboratory informatics considerations: Software and hardware
:''[[LII:Notes on Instrument Data Systems|Notes on Instrument Data Systems]]''
:[[Application programming interface]]
:[[Application programming interface]]
:[[Cloud computing]]
:[[Cloud computing]]
:[[Cloud computing security]]
:[[Data center]]
:[[Desktop virtualization]]
:[[Desktop virtualization]]
:[[Distributed computing]]
:[[Distributed computing]]
Line 52: Line 70:
:[[Middleware]]
:[[Middleware]]
:[[Modularity]]
:[[Modularity]]
:[[Platform as a service]]
:[[Scientific instrument]]
:[[Scientific instrument]]
:[[Software as a service]]
:[[Software as a service]]
;7. Laboratory Informatics Considerations - Data Management and Security
;6. Laboratory informatics considerations: Data management and security
:[[Audit trail]]
:[[Backup]]
:[[Backup]]
:[[Blockchain]]
:[[Blockchain]]
:[[Cloud computing security]]
:[[Computer security]]
:[[Data analysis]]
:[[Data exchange]]
:[[Data exchange]]
:[[Data integrity]]
:[[Data mapping]]
:[[Data mapping]]
:[[Data migration]]
:[[Data migration]]
:[[Data recovery]]
:[[Data retention]]
:[[Data retention]]
:[[Data visualization]]
:[[Data visualization]]
Line 69: Line 92:
:[[Information security]]
:[[Information security]]
:[[Information security management]]
:[[Information security management]]
:[[Information technology security audit]]
:[[IT risk management]]
:[[Master data]]
:[[Master data]]
:[[Metadata]]
:[[Metadata]]
:[[Network security]]
:[[Network security]]
:[[Retention period]]
:[[Retention period]]
:[[Security as a service]]
:[[Single sign-on]]
:[[Single sign-on]]
:[[Web application security]]
:[[Web application security]]
;8. Laboratory Informatics Considerations - Automation
;7. Laboratory informatics considerations: Data, system, and process quality
:[[Conformance testing]]
:[[Control chart]]
:[[Corrective and preventive action]]
:[[Data integrity]]
:[[Data quality]]
:[[Good Automated Laboratory Practices]]
:[[Good Automated Manufacturing Practice]]
:[[Lean laboratory]]
:[[Nonconformity (quality)]]
:[[Quality (business)]]
:[[Quality assurance]]
:[[Quality control]]
:[[Quality management system]]
:[[Software quality]]
:[[Software quality management]]
;8. Laboratory informatics considerations: Automation
:''[[LII:Considerations in the Automation of Laboratory Procedures|Considerations in the Automation of Laboratory Procedures]]''
:[[Artificial intelligence]]
:[[Artificial intelligence]]
:[[Barcode]]
:[[Barcode]]
:[[Concept processing]]
:[[Data exchange]]
:[[Data integration]]
:[[Data integration]]
:[[Data mining]]
:[[Data mining]]
Line 83: Line 128:
:[[Internet of things]]
:[[Internet of things]]
:[[Inventory control]]
:[[Inventory control]]
:[[Knowledge representation and reasoning]]
:[[Laboratory automation]]
:[[Machine learning]]
:[[Predictive maintenance]]
:[[Predictive maintenance]]
:[[Remote data capture]]
:[[SCADA]]
:[[SCADA]]
:[[System integration]]
:[[System integration]]
;9. Laboratory Informatics Considerations - Acquisition and Implementation
;9. Laboratory informatics considerations: Acquisition and implementation
:''[[LII:Laboratory Informatics Software Acquisition and Implementation Considerations|Laboratory Informatics Software Acquisition and Implementation Considerations]]''
:''[[LII:Laboratory Informatics Software Acquisition and Implementation Considerations|Laboratory Informatics Software Acquisition and Implementation Considerations]]''
:[[Acceptance testing]]
:[[Business intelligence]]
:[[Business intelligence]]
:[[Concurrent user]]
:[[Change control]]
:[[Change control]]
:[[Functional requirement]]
:[[Functional requirement]]
:[[Request for information]]
:[[Risk assessment]]
:[[Risk assessment]]
:[[Stakeholder analysis]]
:[[Stakeholder analysis]]
:[[Systems development life cycle]]
:[[Systems development life cycle]]
:[[Workflow]]
:[[Workflow]]
;10. Related Standards and Compliance
;10. Related standards and regulatory considerations
:[[21 CFR Part 11]]
:[[21 CFR Part 11]]
:[[40 CFR Part 3]]
:[[40 CFR Part 3]]
:[[ANSI-ASQ National Accreditation Board]]
:[[ASTM E1578]]
:[[ASTM E1578]]
:[[Clinical Laboratory Improvement Amendments]]
:[[Clinical Laboratory Improvement Amendments]]
:[[Good Automated Laboratory Practices]]
:[[Good Automated Manufacturing Practice]]
:[[Health Insurance Portability and Accountability Act]]
:[[Health Insurance Portability and Accountability Act]]
:[[Health Level 7]]
:[[Health Level 7]]
:[[ISO 15189]]
:[[ISO 9000]]
:[[ISO 9000]]
:[[ISO/IEC 12207]]
:[[ISO/IEC 12207]]
:[[ISO/IEC 17025]]
:[[ISO/IEC 17025]]
:[[ISO/IEC 29119]]
:[[ISO/TS 16949]]
:[[Regulatory compliance]]
:[[Regulatory compliance]]
:[[The American Society of Crime Laboratory Directors/Laboratory Accreditation Board]]
:[[The NELAC Institute]]
:[[The NELAC Institute]]
;11. Laboratory Informatics Resources
;11. Laboratory informatics resources
:''[[LII:A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work|A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work]]''
:''[[LII:A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work|A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work]]''
:''[[LII:Directions in Laboratory Systems: One Person's Perspective|Directions in Laboratory Systems: One Person's Perspective]]''
:''[[LII:A Science Student's Guide to Laboratory Informatics|A Science Student's Guide to Laboratory Informatics]]''
:''[[LII:The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies|The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies]]''
:''[[LII:Justifying LIMS Acquisition and Deployment within Your Organization|Justifying LIMS Acquisition and Deployment within Your Organization]]''
:''[[LII:Laboratory Information Systems Project Management: A Guidebook for International Implementations|Laboratory Information Systems Project Management: A Guidebook for International Implementations]]''
:''[[LII:Laboratory Information Systems Project Management: A Guidebook for International Implementations|Laboratory Information Systems Project Management: A Guidebook for International Implementations]]''
:[[LIMS and laboratory informatics questionnaire|Laboratory information management system (LIMS) questionnaire]]
:''[[Book:LIMSpec 2022 R2|LIMSpec 2022 R2]]''
:[[Laboratory information system (LIS) questionnaire]]
:[[Laboratory informatics software (open source)|Open-source laboratory informatics software]]
:[[Laboratory informatics software (open source)|Open-source laboratory informatics software]]
:[[21 CFR Part 11/Audit guidelines and checklist|21 CFR Part 11: Audit guidelines and checklist]]
 
:[[Health Insurance Portability and Accountability Act/Audit guidelines and checklist|Health Insurance Portability and Accountability Act: Audit guidelines and checklist]]
:[[LIMSWiki:Resources/Consultants|Laboratory informatics consultants]]
;12. Laboratory Informatics Vendors with Pricing
:[[Abbott Informatics Corporation]]
:[[Autoscribe Informatics, Inc.]]
:[[Blaze Systems Corporation]]
:[[LabLynx, Inc.]]
:[[Laboratory, Scientific, and Health Informatics Buyer's Guide|All laboratory informatics vendors with pricing]]


<!--Place all category tags here-->
<!--Place all category tags here-->
[[Category:LIMSwiki books (community books)|Complete Guide to LIMS and Laboratory Informatics]]
[[Category:LIMSwiki books on informatics]]
[[Category:LIMSwiki books on informatics]]

Latest revision as of 17:14, 10 January 2024

The Complete Guide to LIMS and Laboratory Informatics
2024 Edition
Fig3 Liscouski SciStudGuideLabInfo23.png
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Title: The Complete Guide to LIMS and Laboratory Informatics

Edition: 2024 Edition

Author for citation: Shawn E. Douglas

License for content: Creative Commons Attribution-ShareAlike 4.0 International

Publication date: January 2024


Laboratory informatics solutions are as unique as the laboratories that depend on them, coming in many "flavors." Sorting through this great variety of systems can be a daunting task. Add in the fact that many laboratories don't have the personnel who understand every nuance of laboratory informatics and the laboratory information management system (LIMS) or laboratory information system (LIS) they require, and it quickly becomes obvious that finding the ideal LIMS is no simple task.

This annually updated guide provides a comprehensive and informative body of knowledge as it relates to the laboratory and implementing informatics solutions within it. From the software, hardware, and data management side of laboratory informatics to considerations towards security, acquisition, and implementation of the ideal solution, the reader is provided with a wealth of knowledge to better guide their LIMS and laboratory informatics decisions.

1. Informatics in the laboratory
Information
Informatics (academic field)
Laboratory
Laboratory informatics
2. Informatics across the sciences
Biodiversity informatics
Bioinformatics
Cancer informatics
Chemical informatics
Environmental informatics
Genome informatics
Health informatics
Imaging informatics
Infectious disease informatics
Materials informatics
Public health informatics
3. All about LIMS and LIS
Laboratory information management system
LIMS feature
Laboratory information system
LIS feature
4. Other laboratory informatics and support applications
Chromatography data system
Document management system
Electronic data capture system
Electronic health record
Electronic laboratory notebook
Enterprise resource planning system
Laboratory execution system
Picture archiving and communication system
Radiology information system
Scientific data management system
Workflow engine
5. Laboratory informatics considerations: Software and hardware
Notes on Instrument Data Systems
Application programming interface
Cloud computing
Data center
Desktop virtualization
Distributed computing
Interface (computing)
Internationalization and localization
Message broker
Middleware
Modularity
Platform as a service
Scientific instrument
Software as a service
6. Laboratory informatics considerations: Data management and security
Audit trail
Backup
Blockchain
Cloud computing security
Computer security
Data analysis
Data exchange
Data mapping
Data migration
Data recovery
Data retention
Data visualization
Electronic signature
Encryption
Information management
Information privacy
Information security
Information security management
Information technology security audit
IT risk management
Master data
Metadata
Network security
Retention period
Security as a service
Single sign-on
Web application security
7. Laboratory informatics considerations: Data, system, and process quality
Conformance testing
Control chart
Corrective and preventive action
Data integrity
Data quality
Good Automated Laboratory Practices
Good Automated Manufacturing Practice
Lean laboratory
Nonconformity (quality)
Quality (business)
Quality assurance
Quality control
Quality management system
Software quality
Software quality management
8. Laboratory informatics considerations: Automation
Considerations in the Automation of Laboratory Procedures
Artificial intelligence
Barcode
Concept processing
Data exchange
Data integration
Data mining
Environmental monitoring
Internet of things
Inventory control
Knowledge representation and reasoning
Laboratory automation
Machine learning
Predictive maintenance
Remote data capture
SCADA
System integration
9. Laboratory informatics considerations: Acquisition and implementation
Laboratory Informatics Software Acquisition and Implementation Considerations
Acceptance testing
Business intelligence
Concurrent user
Change control
Functional requirement
Request for information
Risk assessment
Stakeholder analysis
Systems development life cycle
Workflow
10. Related standards and regulatory considerations
21 CFR Part 11
40 CFR Part 3
ANSI-ASQ National Accreditation Board
ASTM E1578
Clinical Laboratory Improvement Amendments
Health Insurance Portability and Accountability Act
Health Level 7
ISO 15189
ISO 9000
ISO/IEC 12207
ISO/IEC 17025
Regulatory compliance
The NELAC Institute
11. Laboratory informatics resources
A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work
Directions in Laboratory Systems: One Person's Perspective
A Science Student's Guide to Laboratory Informatics
The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies
Justifying LIMS Acquisition and Deployment within Your Organization
Laboratory Information Systems Project Management: A Guidebook for International Implementations
LIMSpec 2022 R2
Open-source laboratory informatics software