Difference between revisions of "Main Page"

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<!--       "Welcome to LIMSwiki" and article count        -->
<div style="border-bottom:1px solid #abd5f5; background-color:#58cadd; padding:0.5em 0.5em 0.5em 0.5em; font-size:172%; -moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">Welcome to [[LIMSwiki_mission|LIMSwiki.org]], <span style="top:+0.2em; font-size:72%;">the [[Laboratory informatics|laboratory]], [[Health informatics|health]], and science [[informatics]] encyclopedia.</span>
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<br><div style="font-size:162%; border:none; margin:0; padding:0em; color:#000;">Welcome to [[LIMSwiki_mission|LIMSwiki]].</div>
<div style="padding:0.4em 1em 0.3em 1em; font-size:100%;">
<div style="top:+0.2em; font-size:105%;">The free [[Laboratory_informatics|laboratory informatics]] encyclopedia that [[Help:Contents|anyone&nbsp;can&nbsp;edit]].</div>
'''LIMSwiki''' is a collaborative wiki dedicated to the scientific community, featuring organized, documented, and up-to-date content regarding all aspects of [[laboratory informatics]], [[bioinformatics]], and [[health informatics]]. LIMSwiki also strives to maintain relevant knowledge about laboratory equipment as well as commercial and [[:Category:Open-source software|open-source]] software likely to be used in a [[laboratory]] setting. This also includes the [[:Category:Vendors|vendors]] of such equipment and software.
<div id="articlecount" style="font-size:85%;">[[Special:ListUsers|Users]] have contributed: [[Special:Statistics|{{NUMBEROFARTICLES}}]] articles.</div><br>
 
Like any community wiki, the value and success of LIMSwiki is dependent upon the scientific community contributing their vast knowledge through the creation of relevant articles and editing of existing articles where knowledge is absent. If you wish to enrich the content of this wiki or have something of value to add, please [[:Special:RequestAccount|request an account]] and get started.</div>
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Need help getting started with LIMSwiki? Have no fear! Here are some excellent starting points:<br />&nbsp;<br />
! style="padding:2px;" |<h2 style="margin:3px; background:#cedff2; font-size:120%; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#180360; padding:0.2em 0.4em;">Getting Started</h2>
 
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If you're new to editing a wiki, the best place to start learning editing syntax is the [[Help:Contents|Basic Text Formatting]] help file. <br>&nbsp;<br>Below are some links to introduce you to LIMSwiki:
* [[LIMSwiki mission]]
* [[LIMSwiki mission]]
* [[Special:AllPages|Glossary of all pages]]
* [[:Category:Articles with unsourced statements|List of pages with unsourced statements]]
* [[Main Page/archive|Archive of front-page content]]
* [[Add and change request|Add and change requests]]
* [[Special:RequestAccount|Request a LIMSwiki account]]
* [[Special:RequestAccount|Request a LIMSwiki account]]
* [http://meta.wikimedia.org/wiki/Help:Contents_User's_Guide A Wiki User's Guide]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]


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LIMSwiki and MediaWiki help:
! style="padding:2px;" | <h2 style="margin:3px; background:#cedff2; font-size:120%; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#180360; padding:0.2em 0.4em;">Latest Updates and News</h2>
 
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* [[:Category:LIMSwiki help documentation|LIMSwiki help documentation]]
| <h2 style="font-size:105%; font-weight:bold; text-align:left; color:#000; padding:0.2em 0.4em; width:50%;">February 22, 2012:</h2>
* [[Help:MediaWiki basics|LIMSwiki training guides]]
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* [[Help:Formatting|Wikitext formatting help and examples]]
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* [[Main_Page/news#April_18.2C_2011:|LIMSwiki naming conventions for article titles]]
[[File:EDSAC (21).jpg|thumb|left|Thankfully data storage and analysis in the lab has gotten easier.]]'''Yes, this wiki is still alive!''' It's strange to think it's been almost a year since it was introduced. Since then those with the time to spare have added a wide variety of infrastructure and some content. It has been a slow process, however, and like any major wiki project, more knowledgeable and dedicated editors are needed.
* [[Help:Using the Internet Archive|Using and citing the Internet Archive]]
* [http://meta.wikimedia.org/wiki/Help:Contents_User's_Guide MediaWiki user's guide]
* [[:Category:LIMSwiki maintenance|LIMSwiki maintenance portal]]
 
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So what has been going on with the wiki? The initial focus was to get some of the major concepts like [[laboratory information management system]] (LIMS) and [[electronic laboratory notebook]] (ELN) documented at least up to a decent state of quality, with room for article improvement later on. Then a fair amount of effort went into documenting just ''who'' is [[LIMS vendor|selling LIMS]], [[LIS vendor|LIS]], [[ELN vendor|ELN]], and [[CDMS vendor|CDMS]]. More infrastructure went into place for [http://limswiki.org/index.php?title=Special%3AAllPages&from=&to=&namespace=14 categories], and a method was put in place for vendors to include a knowledge base on the wiki. Most recently work has been done to track the features LIMS vendors publicly advertise for their LIMS and document them on each vendor page. That work — along with work detailing what each piece of LIMS functionality generally does — is still in progress.
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<div style="border-bottom:1px solid #aae6ef; background-color:#aae6ef; padding:0.2em 0.5em 0.2em 0.5em; font-size:110%; font-weight:bold;-moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">Featured article of the week</div>
<div style="padding:0.4em 1em 0.3em 1em;"><br />
{{Article of the week}}
<div align="center">'''[[Main Page/Featured article of the week/2018|— See more archived featured articles —]]'''</div>
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<div style="border-bottom:1px solid #aae6ef; background-color:#aae6ef; padding:0.2em 0.5em 0.2em 0.5em; font-size:110%; font-weight:bold;-moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">Learn more</div>
<div style="padding:0.4em 1em 0.3em 1em;">
<div style="float: left; margin: 0.4em 0.4em 0.4em 0em;">[[File:Learn.png|40px]]</div>
Need to know more about [[laboratory informatics|laboratory]] and [[Informatics|other types of informatics]]? Here is some suggested reading:<br />&nbsp;<br />
* [[Informatics (academic field)|Informatics]]
* [[Chromatography data management system]]
* [[Electronic laboratory notebook]]
* [[Laboratory execution system]]
* [[Laboratory information management system]]
* [[Laboratory information system]]
* [[Scientific data management system]]
* [[:Category:Regulatory information|All regulatory articles]]
<br />
LIMSwiki publications:
* ''[[Book:The Complete Guide to LIMS & Lab Informatics|The Complete Guide to LIMS & Lab Informatics]]''
* '''NEW''': ''[[LII:A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work|A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work]]''
</div>


As for the future, we hope to build a critical mass of people willing to help research, write, and cite information about all things [[laboratory informatics]]. The need for storing laboratory data, analyzing samples, and improving [[workflow]] will only become greater, and with that need comes a demand for clear and referenced information about laboratory data management and the laboratories that require it.
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Best,
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<div style="border-bottom:1px solid #aae6ef; background-color:#aae6ef; padding:0.2em 0.5em 0.2em 0.5em; font-size:110%; font-weight:bold;-moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">LIMSwiki books</div>
<div style="padding:0.4em 1em 0.3em 1em;">
[[File:Pedia-still-7.jpg|thumb|right|200px|Examples of books printed from Wikipedia]]<br />A '''[[LIMSWiki:Books|LIMSwiki book]]''' is a collection of LIMSwiki articles that can be easily saved to the wiki, rendered electronically in PDF, or ordered as a printed book. Need to know more about LIMSwiki books?
<br />
* [{{fullurl:Special:Book|bookcmd=book_creator}} Create a book] - use the book creator
* [[Help:Books|User help]] – help with using the tool
* [[Help:Books/For experts|Advanced help]] – help with advanced functions
* [[Help:Books/FAQ|FAQ]] – a FAQ regarding the tool
* [[Help:Books/Feedback|Feedback]] – report and track bugs
<br />


[[User:Shawndouglas|Shawn Douglas]] 15:57, 22 February 2012 (EST)
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<center>'''[[:Category:LIMSwiki books (community books)|Browse all {{formatnum:{{#expr: {{formatnum:{{PAGESINCATEGORY:LIMSwiki books (community books)}}|R}}}}}} LIMSwiki books]]'''.</center>
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<div style="float: left; margin: 0.4em 0.4em 0.4em 0em;">[[File:CloudSoftware.png|50px]]</div>
Are you looking for [[LIMS]] software? An [[electronic laboratory notebook]]? Or perhaps laboratory equipment? Try these suggestions:
* [[:Category:Vendors|All active lab equipment and software vendors]]
* [[CDMS vendor|CDMS vendors past and present]]
* [[ELN vendor|ELN vendors past and present]]
* [[LIMS vendor|LIMS vendors past and present]]
* [[LIS vendor|LIS vendors past and present]]
* [[SDMS vendor|SDMS vendors past and present]]
* [[Miscellaneous informatics software vendor|Misc. informatics software vendors past and present]]


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Additional tools:
* [[LIMSWiki:Resources/Consultants|Laboratory and scientific informatics consultants]]
* [[Key laboratory informatics vendors and software]]
* [[Inactive vendor|''Inactive'' informatics software vendors]]
* [[:Category:Vendor classes|Classifications of vendors]]
* [[:Category:LIMS vendors by industry|LIMS vendors by industry]]
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! style="padding:2px;" |<h2 style="margin:3px; background:#cef2e0; font-size:120%; font-weight:bold; border:1px solid #a3b0bf; text-align:left; color:#180360; padding:0.2em 0.4em;">Previous Updates and News</h2>
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| <h2 style="font-size:105%; font-weight:bold; text-align:left; color:#000; padding:0.2em 0.4em; width:50%;">May 22, 2011:</h2>
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[[File:PBB GE IL10 207433 at fs.png|thumb|left|Genomics is only one branch of science that heavily depends on laboratory informatics.]]While researching modern vendors of [[laboratory informatics]] software, I stumbled across [http://www.labvantage.com/blog/index.php/2011/05/lims-eln-sdms-cdms-ecm-les-lis-edc-and-other-interesting-acronyms/ a post] by [[LABVANTAGE Solutions, Inc.|LABVANTAGE's]] Terry Smallmon from earlier this month. In it he rightfully points out that while the nomenclature of laboratory informatics has historically had distinct subdivisions such as [[LIMS]], [[ELN]], and [[CDS]], times are changing. The lines that differentiate a LIMS from a [[SDMS]], for example, have blurred significantly, almost to the point where the nomenclature is losing its meaning in some cases. Smallmon also notes that as vendors take a more modular approach to laboratory informatics, the distinctions fade even more. Finally he points out that at least for him, determining what a potential customer needs shouldn't be based on nomenclature alone, but rather on the problem(s) a customer is trying to solve.


From my limited perspective, I can't disagree with Smallmon's observations. In fact, the blurred definition of laboratory informatics solutions is referenced in several cases among the major articles. However, I feel it important to emphasize that while definitions of these solutions may be blurring, a rough majority of vendors seem to continue using the nomenclature to describe their offerings. While I can understand the trepidation and skepticism behind trying to more appropriately define the industry nomenclature, the endeavor still seems a worthy one. Sure, we'll never have full agreement on the definition of any one term; however, by making the effort to coalesce the history of laboratory informatics, the industry should in theory have more cohesion.  
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<div style="border-bottom:1px solid #aae6ef; background-color:#aae6ef; padding:0.2em 0.5em 0.2em 0.5em; font-size:110%; font-weight:bold;-moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">LIMSwiki journal articles</div>
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[[File:Annual volumes of articles in full immediate open access journals - 1741-7015-10-124-2.png|thumb|right|150px|Open-access articles becoming more common]]<br />A '''[[LIMSWiki:Journal articles|LIMSwiki journal article]]''' is a selected open-access article relating to various fields of informatics, free to republish elsewhere with proper citation. You can browse the collection using the tools below. Also note that like other articles found on this wiki, journal articles can be added to [[LIMSWiki:Books|LIMSwiki books]].


As an outsider looking in, I perceive this to be a desirable goal. Laboratory informatics is an increasingly vital component of laboratories and scientific research. I recently was told a story from a programmer friend who works in genomics. He related that from his viewpoint, there's an increasingly large bottleneck between the amount of data being created in genomics labs and how it's stored and processed. This really struck home for me. As technology allows for better data collection, so should it allow for better storage and processing. And laboratory informatics is at the center of all of this. Faster and more efficient systems will be needed, and regardless of nomenclature, these solutions will solve problems.  
For a full listing of journals — open-access and otherwise — relating to [[laboratory informatics]], [[bioinformatics]], and other forms of [[informatics]], please see [[LIMSWiki:Resources/Journals]].
 
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<h2 style="border:1px solid #AAAAAA; background-color:#aae6ef; padding:0.2em 0; margin:0px; font-size: 110%; font-weight:bold; text-indent:0.5em;">Journal articles</h2>
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<center>'''[[:Category:LIMSwiki journal articles|Browse all {{formatnum:{{#expr: {{formatnum:{{PAGESINCATEGORY:LIMSwiki journal articles (all)}}|R}} }}}} journal articles]]'''.</center><br />
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<div style="font-size:90%; text-align:center;">[[:Category:LIMSwiki journal articles on informatics|All {{PAGESINCATEGORY:LIMSwiki journal articles on informatics}} journal articles about informatics in general]]{{·}}[[:Category:LIMSwiki journal articles on health informatics|All {{PAGESINCATEGORY:LIMSwiki journal articles on health informatics}} journal articles about health informatics]]</div>
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<div style="float: left; margin: 0.4em 0.4em 0.4em 0em;">[[File:OpenSource.jpg|50px]]</div>
Looking for open-source software solutions to make your lab or office more efficient? Try these locations:
 
<br />
 
* [[:Category:Open-source software|All open-source software options, by category]]
* [[:Category:Electronic laboratory notebooks (open source)|Open-source ELN software]]
* [[:Category:Laboratory information management systems (open source)|Open-source LIMS software]]
* [[:Category:Laboratory information systems (open source)|Open-source LIS software]]
* [[:Category:Scientific data management systems (open source)|Open-source SDMS software]]
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We've created several resources for users of the wiki over the years, including the [[LIMSWiki:Resources|LIMSwiki informatics resource portal]], which contains among other tools:
# [[LIMSWiki:Resources#Magazines, journals, and blogs|Magazines, journals, and blogs]]
# [[LIMSWiki:Resources#Organizations, not-for-profits, and special interest groups|Organizations, not-for-profits, and special interest groups]]
# [[LIMSWiki:Resources#Conferences and trade shows|Conferences and trade shows]]
# [[LIMSWiki:Resources/Consultants|Consultants]]
# [[LIMSWiki:Resources#Knowledge base, research, and reference|Knowledge base, research, and reference]]
 
Additional tools:
* '''NEW''': ''[[LII:The Laboratories of Our Lives: Labs, Labs Everywhere!|The Laboratories of Our Lives: Labs, Labs Everywhere!]]''
* ''[[LII:Past, Present, and Future of Cannabis Laboratory Testing and Regulation in the United States|Past, Present, and Future of Cannabis Laboratory Testing and Regulation in the United States]]''
* ''[[LII:The Practical Guide to the U.S. Physician Office Laboratory|The Practical Guide to the U.S. Physician Office Laboratory]]''
* [[Laboratory information system (LIS) questionnaire]]
* [[LIMS and laboratory informatics questionnaire]]
* [[Laboratory, Scientific, and Health Informatics Buyer's Guide]]
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That said, collecting the history and relevant information surrounding the field can only help unify the effort to create better solutions. The names and definitions of those solutions may change with time, but it doesn't mean we shouldn't make the effort. Just as we document the never-ending changes of language in dictionaries, so should we document the changes of the laboratory informatics industry. It's poised to play an important role in humanity's advancement.
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{{Latest news}}
<div align="center">[[Main Page/news|— Read more archived news —]]</div>
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Best,
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[[User:Shawndouglas|Shawn Douglas]] 18:43, 22 May 2011 (EDT)
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{{Most popular pages}}<br />
<div align="center">[[:Special:PopularPages|— View all current most popular pages —]]</div>
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Revision as of 23:14, 26 January 2018


Welcome to LIMSwiki.org, the laboratory, health, and science informatics encyclopedia.
Users have contributed: 769 articles.

LIMSwiki is a collaborative wiki dedicated to the scientific community, featuring organized, documented, and up-to-date content regarding all aspects of laboratory informatics, bioinformatics, and health informatics. LIMSwiki also strives to maintain relevant knowledge about laboratory equipment as well as commercial and open-source software likely to be used in a laboratory setting. This also includes the vendors of such equipment and software.

Like any community wiki, the value and success of LIMSwiki is dependent upon the scientific community contributing their vast knowledge through the creation of relevant articles and editing of existing articles where knowledge is absent. If you wish to enrich the content of this wiki or have something of value to add, please request an account and get started.


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Featured article of the week

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"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
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LIMSwiki books
Examples of books printed from Wikipedia

A LIMSwiki book is a collection of LIMSwiki articles that can be easily saved to the wiki, rendered electronically in PDF, or ordered as a printed book. Need to know more about LIMSwiki books?




Laboratory informatics software and products
LIMSwiki journal articles
Open-access articles becoming more common

A LIMSwiki journal article is a selected open-access article relating to various fields of informatics, free to republish elsewhere with proper citation. You can browse the collection using the tools below. Also note that like other articles found on this wiki, journal articles can be added to LIMSwiki books.

For a full listing of journals — open-access and otherwise — relating to laboratory informatics, bioinformatics, and other forms of informatics, please see LIMSWiki:Resources/Journals.


Open-source software
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Looking for open-source software solutions to make your lab or office more efficient? Try these locations:


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Latest news

November 20, 2023:

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Are you studying some sort of laboratory-based science in university? How well do your classes address laboratory informatics topics, particularly in the scope of industrial labs and how they operate outside of academia? If you find the discussion lacking, then his guide by industry veteran Joe Liscouski will be worth a look. In his guide A Science Student's Guide to Laboratory Informatics, Liscouski presents "an annotated map of the laboratory portion of a technological world, identifying critical points of interest and how they relate to one another, while making recommendations for the reader to learn more." Hope you find it useful! Shawn Douglas (talk) 18:48, 20 November 2023 (UTC)


 

July 26, 2023:

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Do you feel your lab needs laboratory informatics software but you're not sure how to justify it to management? Then this new guide from Joe Liscouski and Shawn Douglas may be just what you need. Justification for a laboratory information management system (LIMS) or some other lab management solution isn't always straightforward with upper management and critical stakeholders; the process will need to be succinct and relevant, based on organizational goals, economic concerns, and practical realities. This guide will help you—whether you are a lab manager, lab technician, or someone else in the organization with a stake in seeing laboratory operations improve—understand what a LIMS is, what the alternatives are, what and why acquiring one looks like, and what needs to be considered in putting together a competent and persuasive LIMS project proposal. This guide also includes a handy Microsoft Excel workbook that will help act as a "cheat sheet" for persuading stakeholders to better buy into your vision of LIMS acquisition and deployment within your organization. Enjoy! Shawn Douglas (talk) 16:32, 26 July 2023 (UTC)


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