Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Aronson JournalOfPersMed2016 6-1.png|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Goldberg mBio2015 6-6.jpg|240px]]</div>
'''"[[Journal:Information technology support for clinical genetic testing within an academic medical center|Information technology support for clinical genetic testing within an academic medical center]]"'''
'''"[[Journal:Making the leap from research laboratory to clinic: Challenges and opportunities for next-generation sequencing in infectious disease diagnostics|Making the leap from research laboratory to clinic: Challenges and opportunities for next-generation sequencing in infectious disease diagnostics]]"'''


Academic medical centers require many interconnected systems to fully support genetic testing processes. We provide an overview of the end-to-end support that has been established surrounding a genetic testing laboratory within our environment, including both [[laboratory]] and clinician-facing infrastructure. We explain key functions that we have found useful in the supporting systems. We also consider ways that this infrastructure could be enhanced to enable deeper assessment of genetic test results in both the laboratory and clinic. ('''[[Journal:Information technology support for clinical genetic testing within an academic medical center|Full article...]]''')<br />
Next-generation DNA sequencing (NGS) has progressed enormously over the past decade, transforming [[Genomics|genomic]] analysis and opening up many new opportunities for applications in clinical microbiology [[Laboratory|laboratories]]. The impact of NGS on microbiology has been revolutionary, with new microbial genomic sequences being generated daily, leading to the development of large databases of genomes and gene sequences. The ability to analyze microbial communities without culturing organisms has created the ever-growing field of metagenomics and microbiome analysis and has generated significant new insights into the relation between host and microbe. The medical literature contains many examples of how this new technology can be used for infectious disease diagnostics and pathogen analysis. The implementation of NGS in medical practice has been a slow process due to various challenges such as clinical trials, lack of applicable regulatory guidelines, and the adaptation of the technology to the clinical environment. In April 2015, the American Academy of Microbiology (AAM) convened a colloquium to begin to define these issues, and in this document, we present some of the concepts that were generated from these discussions. ('''[[Journal:Making the leap from research laboratory to clinic: Challenges and opportunities for next-generation sequencing in infectious disease diagnostics|Full article...]]''')<br />
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''Recently featured'':  
''Recently featured'':  
: ▪ [[Journal:Information technology support for clinical genetic testing within an academic medical center|Information technology support for clinical genetic testing within an academic medical center]]
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: ▪ [[Journal:Principles of metadata organization at the ENCODE data coordination center|Principles of metadata organization at the ENCODE data coordination center]]
: ▪ [[Journal:Integrated systems for NGS data management and analysis: Open issues and available solutions|Integrated systems for NGS data management and analysis: Open issues and available solutions]]
: ▪ [[Journal:Integrated systems for NGS data management and analysis: Open issues and available solutions|Integrated systems for NGS data management and analysis: Open issues and available solutions]]
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Revision as of 15:51, 21 November 2016

Fig1 Goldberg mBio2015 6-6.jpg

"Making the leap from research laboratory to clinic: Challenges and opportunities for next-generation sequencing in infectious disease diagnostics"

Next-generation DNA sequencing (NGS) has progressed enormously over the past decade, transforming genomic analysis and opening up many new opportunities for applications in clinical microbiology laboratories. The impact of NGS on microbiology has been revolutionary, with new microbial genomic sequences being generated daily, leading to the development of large databases of genomes and gene sequences. The ability to analyze microbial communities without culturing organisms has created the ever-growing field of metagenomics and microbiome analysis and has generated significant new insights into the relation between host and microbe. The medical literature contains many examples of how this new technology can be used for infectious disease diagnostics and pathogen analysis. The implementation of NGS in medical practice has been a slow process due to various challenges such as clinical trials, lack of applicable regulatory guidelines, and the adaptation of the technology to the clinical environment. In April 2015, the American Academy of Microbiology (AAM) convened a colloquium to begin to define these issues, and in this document, we present some of the concepts that were generated from these discussions. (Full article...)

Recently featured:

Information technology support for clinical genetic testing within an academic medical center
Principles of metadata organization at the ENCODE data coordination center
Integrated systems for NGS data management and analysis: Open issues and available solutions