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'''"[[Journal:Advanced engineering informatics: Philosophical and methodological foundations with examples from civil and construction engineering|Advanced engineering informatics: Philosophical and methodological foundations with examples from civil and construction engineering]]"'''
'''"[[Journal:Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology|Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology]]"'''


We argue that the representation and formalization of complex engineering knowledge is the main aim of inquiries in the scientific field of [[Wikipedia:Engineering informatics|advanced engineering informatics]]. We introduce [[Ontology (information science)|ontology]] and logic as underlying methods to formalize [[Information#As an influence which leads to a transformation|knowledge]]. We also suggest that it is important to account for the purpose of engineers and the context they work in while representing and formalizing knowledge. Based on the concepts of ontology, logic, purpose, and context, we discuss different possible research methods and approaches that scholars can use to formalize complex engineering knowledge and to validate whether a specific formalization can support engineers with their complex tasks. On the grounds of this discussion, we suggest that research efforts in advanced engineering should be conducted in a bottom-up manner, closely involving engineering practitioners. We also suggest that researchers make use of social science methods while both eliciting knowledge to formalize and validating that formalized knowledge. ('''[[Journal:Advanced engineering informatics: Philosophical and methodological foundations with examples from civil and construction engineering|Full article...]]''')<br />
Full [[laboratory automation]] is revolutionizing work habits in an increasing number of clinical [[microbiology]] facilities worldwide, generating huge streams of [[Imaging|digital images]] for interpretation. Contextually, [[deep learning]] (DL) architectures are leading to paradigm shifts in the way computers can assist with difficult visual interpretation tasks in several domains. At the crossroads of these epochal trends, we present a system able to tackle a core task in clinical microbiology, namely the global interpretation of diagnostic [[Bacteria|bacterial]] [[Cell culture|culture]] plates, including presumptive [[pathogen]] identification. This is achieved by decomposing the problem into a hierarchy of complex subtasks and addressing them with a multi-network architecture we call DeepColony ... ('''[[Journal:Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology|Full article...]]''')<br />
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Latest revision as of 15:02, 3 June 2024

Fig1 Signoroni NatComm23 14.png

"Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology"

Full laboratory automation is revolutionizing work habits in an increasing number of clinical microbiology facilities worldwide, generating huge streams of digital images for interpretation. Contextually, deep learning (DL) architectures are leading to paradigm shifts in the way computers can assist with difficult visual interpretation tasks in several domains. At the crossroads of these epochal trends, we present a system able to tackle a core task in clinical microbiology, namely the global interpretation of diagnostic bacterial culture plates, including presumptive pathogen identification. This is achieved by decomposing the problem into a hierarchy of complex subtasks and addressing them with a multi-network architecture we call DeepColony ... (Full article...)
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