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Welcome to LIMSwiki.org, the laboratory, health, and science informatics encyclopedia.
Users have contributed: 1,525 articles.

LIMSwiki is a collaborative wiki dedicated to the scientific community, featuring organized, documented, and up-to-date content regarding all aspects of laboratory informatics, bioinformatics, and health informatics. LIMSwiki also strives to maintain relevant knowledge about laboratory equipment as well as commercial and open-source software likely to be used in a laboratory setting. This also includes the vendors of such equipment and software.

Like any community wiki, the value and success of LIMSwiki is dependent upon the scientific community contributing their vast knowledge through the creation of relevant articles and editing of existing articles where knowledge is absent. If you wish to enrich the content of this wiki or have something of value to add, please request an account and get started.


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Featured article of the week

Fig5 Lukauskas BMCBioinformatics2016 17-Supp16.gif

"DGW: An exploratory data analysis tool for clustering and visualisation of epigenomic marks"

Functional genomic and epigenomic research relies fundamentally on sequencing-based methods like ChIP-seq for the detection of DNA-protein interactions. These techniques return large, high-dimensional data sets with visually complex structures, such as multi-modal peaks extended over large genomic regions. Current tools for visualisation and data exploration represent and leverage these complex features only to a limited extent.

We present DGW (Dynamic Gene Warping), an open-source software package for simultaneous alignment and clustering of multiple epigenomic marks. DGW uses dynamic time warping to adaptively rescale and align genomic distances which allows to group regions of interest with similar shapes, thereby capturing the structure of epigenomic marks. We demonstrate the effectiveness of the approach in a simulation study and on a real epigenomic data set from the ENCODE project. (Full article...)

Recently featured:

SCIFIO: An extensible framework to support scientific image formats
Use of application containers and workflows for genomic data analysis
Informatics metrics and measures for a smart public health systems approach: Information science perspective


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LIMSwiki books
Examples of books printed from Wikipedia

A LIMSwiki book is a collection of LIMSwiki articles that can be easily saved to the wiki, rendered electronically in PDF, or ordered as a printed book. Need to know more about LIMSwiki books?



Laboratory informatics software and products
LIMSwiki journal articles
Open-access articles becoming more common

A LIMSwiki journal article is a selected open-access article relating to various fields of informatics, free to republish elsewhere with proper citation. You can browse the collection using the tools below. Also note that like other articles found on this wiki, journal articles can be added to LIMSwiki books.

For a full listing of journals — open-access and otherwise — relating to laboratory informatics, bioinformatics, and other forms of informatics, please see LIMSWiki:Resources/Journals.


Open-source software

Looking for open-source software solutions to make your lab or office more efficient? Try these locations:

Additional LIMSwiki resources


Additional information
Latest news

January 3, 2017:

Lab book - Lawrence Berkeley National Laboratory - DSC08822.JPG

2016 had its share of ups and downs for many, and the same holds true for LIMSwiki. From a web attack to dealing with time constraints, it was all about resources, resources, resources. As the wiki has grown over the years, more time has been required for weekly, monthly, quarterly, etc. maintenance tasks. Despite this, however, a few new projects sprung up on the wiki. Though not complete, we made significant headway on a directory (with external links) of U.S. government- and/or self-certified Small Business Administration (SBA) entities offering custom software development and general IT services under government contract. (The idea was those seeking laboratory and scientific informatics implementations could also investigate SBA providers for their service needs.) Developing and adding content for book format was also a goal in 2016, including topics such as medical implants, chemistry, health and biomedical informatics, and web application security, among others. And of course we had smaller updates, such as adding LinkedIn URLs to vendor pages, to go along with long-term maintenance and content addition goals like expanding our open-access journal articles on a weekly basis. Finally, development of a huge education-related project took up a significant portion of the latter part of 2016; details will appear here in the news in the coming month or so.

We hope in 2017 to continue adding useful content while striving to find balance with the increasing number of maintenance tasks. Happy wikiing, and Happy New Year!

Shawn Douglas (talk) 17:43, 3 January 2017 (UTC)

Most popular pages

This section represents most popular pages by page view as of January 2016. You can still find records of our Top 30 listings back to April 2012 on the history page for this template. Simply click on the "prev" link of an edit on that page and scroll down to see the listing as it was for that date.



The most popular pages (by page views) on LIMSwiki as of March 7, 2017 are:

  1. Main Page‏‎ (353,588 views)
  2. XOOPS (70,519 views)
  3. LIMS vendor (65,733 views)
  4. Tiki Wiki CMS Groupware‏‎ (52,781 views)
  5. LIS vendor (42,700 views)
  6. ELN vendor (26,987 views)
  7. LIMS feature (21,058 views)
  8. 21 CFR Part 11/Audit guidelines and checklist‏‎ (17,033 views)
  9. LabLynx, Inc. (11,900 views)
  10. Laboratory informatics (11,831 views)
  11. Laboratory information system (11,645 views)
  12. LIS feature (11,498 views)
  13. Physician office laboratory (11,244 views)
  14. LabWare, Inc. (10,205 views)
  15. Thermo Scientific (10,139 views)
  16. Laboratory information management system (9,691 views)
  17. Health informatics (8,345 views)
  18. SLCLAB Informática SL (8,269 views)
  19. Electronic laboratory notebook‏‎ (7,385 views)
  20. Scientific data management system (6,417 views)
  21. Oxwall (6,240 views)
  22. ClinCapture (5,803 views)
  23. Laboratory, Scientific, and Health Informatics Buyer's Guide‏‎ ((5,359 views)
  24. Cloud computing (5,278 views)
  25. Quartz Imaging Corporation (5,250 views)
  26. ELN feature‏‎ (5,101 views)
  27. 21 CFR Part 11‏‎ (5,065 views)
  28. LIMS and laboratory informatics questionnaire (5,025 views)
  29. LIMSwiki mission (4,987 views)
  30. Reference laboratory (4,907 views)