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• Journal:From command-line bioinformatics to bioGUI
  ...e to bioGUI’s support for Windows Subsystem for Linux. In addition, bioGUI templates can easily be created, making the bioGUI framework highly rewarding for dev ...loud. On a local workstation it can induce incompatibilities with existing software (using Hyper-V on Windows). A [[Cloud computing|cloud-based]] service may c
  97 KB (13,006 words) - 00:53, 7 January 2020
• LIS feature
  This category ties in with the [[#Configurable templates and forms|custom templates and forms]] functionality apparent in some LIS, providing both custom and s ===Configurable templates and forms===
  73 KB (10,473 words) - 01:16, 5 April 2024
• Journal:Djeen (Database for Joomla!’s Extensible Engine): A research information management system for flexible multi-technology project administration
  ...the same system. Advanced permissions are managed through different roles. Templates allow Minimum Information (MI) compliance. ...</ref><ref name="VallonBASE09">{{cite journal |title=BASE - 2nd generation software for microarray data management and analysis |journal=BMC Bioinformatics |au
  42 KB (6,050 words) - 23:53, 11 January 2016
• Journal:SystemPipeR: NGS workflow and report generation environment
  ...ufficient resources are currently available for integrating the individual software components within the widely used R/Bioconductor environment into automated ...emplates for RNA-Seq, ChIP-Seq, VAR-Seq, and Ribo-Seq. Additional workflow templates will be provided in the future.
  46 KB (6,269 words) - 20:15, 27 August 2018
• Journal:Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation
  ...all biological and chemical resources—as well as not only the devices and software but also the research data itself—can be seen as entities; researchers co ...ublished at [https://www.protocols.io/ protocols.io]. While those protocol templates do encode a list of abstract instructions, they do not necessarily reflect
  124 KB (16,896 words) - 16:29, 29 April 2024
• Journal:A model for design and implementation of a laboratory information management system specific to molecular pathology laboratory operations
  ...which may be emulated for scalable and cost-effective laboratory-authored software. ...pathology, laboratory information management system, LIMS, bioinformatics, software development, Agile-Scrum
  77 KB (9,756 words) - 22:16, 4 April 2024
• ELN feature
  ...ftware tools for researchers.]] Chemical drawing and calculation refers to software tools used to create visual representations of molecules and reactions as w ...digo ELN: The Open-Source Chemistry Electronic Lab Notebook |publisher=GGA Software Services LLC |accessdate=15 February 2013}}</ref>
  61 KB (8,819 words) - 18:09, 12 April 2024
• Journal:Eleven quick tips for architecting biomedical informatics workflows with cloud computing
  ...ained from experience developing, operating, maintaining, and distributing software and virtualized appliances on the world’s largest cloud. Researchers who ...networks, computer software, data management, reproducibility, scientists, software development
  42 KB (6,067 words) - 20:36, 26 June 2018
• Journal:SODAR: Managing multiomics study data and metadata
  ...duce SODAR, the system for [[omics]] data access and retrieval. SODAR is a software package that addresses these challenges by providing a web-based graphical ...upports complex omics integration studies and can be easily installed. The software is written in [[Python (programming language)|Python 3]] and freely availab
  61 KB (8,704 words) - 16:14, 29 March 2024
• Journal:Electronic lab notebooks: Can they replace paper
  ...ng cloud notebook platform that makes use of accessible popular scientific software and semantic web technologies to help overcome the identified barriers to a ...ry notebooks (ELNs), notebooking software, cloud, semantic web, scientific software
  85 KB (11,635 words) - 18:49, 11 April 2024
• Journal:Handling metadata in a neurophysiology laboratory
  ...alysis workflows, and a lack of knowledge on how to make use of supporting software tools often overburden researchers to perform such a detailed documentation ...act that an electrophysiological setup is composed of several hardware and software components, often from different vendors, imposes the need to handle multip
  88 KB (13,049 words) - 18:41, 22 December 2017
• Journal:Basics of case report form designing in clinical research
  ...d data integrity. It is recommended to establish and maintain a library of templates of standard CRF modules as they are time saving and cost-effective. This ar ...guidelines, case report form design, electronic case report form, standard templates
  28 KB (4,313 words) - 20:51, 28 December 2015
• Journal:Electronic laboratory notebooks in a public–private partnership
  ...igitized version. An analysis of this data can be performed by specialized software and dedicated hardware. The classical application of a LN fails in these en • Create and share templates for experimental documentation<br />
  80 KB (10,946 words) - 22:44, 12 September 2017
• Journal:Sample identifiers and metadata to support data management and reuse in multidisciplinary ecosystem sciences
  We also reviewed existing metadata standards and templates that are relevant for samples collected by environmental scientists, includ ...translation table comparing metadata elements from existing standards and templates):
  98 KB (13,366 words) - 16:40, 29 April 2024
• Journal:Kadi4Mat: A research data infrastructure for materials science
  ..., researchers can be supported throughout the entire research process. The software is being developed as a web-based and desktop-based system, offering both a ...</ref>, and Invenio<ref name="InvenioHome">{{cite web |url=https://invenio-software.org/ |title=Invenio |publisher=CERN |accessdate=19 May 2020}}</ref>, where
  54 KB (7,990 words) - 20:11, 24 February 2021
• Journal:ROBOT: A Tool for Automating Ontology Workflows
  ...multiple formats. Similar to more general [[Systems development life cycle|software development]], automation is the key to executing and managing these tasks ...ion programming interface]]) Java library is the foundation for a range of software tools, including the Protégé ontology editor. In the Open Biological and
  55 KB (8,385 words) - 20:40, 19 September 2021
• Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration
  ...with openly sharing our research, we have hosted ELNs on the [[open-source software]] platform [[LabTrove]]<ref name=":2">{{Cite journal |last=Badiola |first=K ...ce code; however, in recent years the GitHub community has expanded. After software development, education, and data, science now represents the fourth largest
  58 KB (8,393 words) - 20:35, 3 April 2024
• LII:Laboratory, Scientific, and Health Informatics Buyer's Guide
  ...pically ponder upon finding themselves charged with the mission of finding software for their lab. It can be a daunting proposition, and there are few at least ...uable information about evaluating, acquiring, and implementing laboratory software that fits your lab's needs. Also included here are laboratory informatics v
  61 KB (9,151 words) - 01:10, 28 March 2024
• Journal:Infrastructure tools to support an effective radiation oncology learning health system
  ...schemas. Although the column names in the relational databases between two software products might be the same, semantic meaning based on the application of us ...try of relevant clinical information by physicians and clinical staff. The software processes the extracted data for quality and outcome assessment, using well
  111 KB (15,368 words) - 21:08, 20 May 2024
• Journal:Ten simple rules for managing laboratory information
  ...st4=Hsin |first4=Kun-Yi |last5=Kitano |first5=Hiroaki |date=2011-12 |title=Software for systems biology: from tools to integrated platforms |url=https://www.na ...experience using a variety of tools, including spreadsheets, [[open-source software]], homegrown databases, and commercial solutions to manage our data. Irrepr
  79 KB (11,398 words) - 18:59, 11 April 2024

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