Difference between revisions of "File:Fig2 Wang BMCBioinfo2019 20.png"
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==Summary== | |||
{{Information | |||
|Description='''Fig. 2''' CytoConverter output from a cancer cell line. The top panel shows a screenshot of CytoConverter as applied to the karyotype of the cell line AML-193. The output produced by our web tool is under “Text Result,” wherein the sample is referred to as “sample_1” by default. The bottom panel shows the results from microarray-based copy number analysis of AML-193, as performed in Barretina et al. and visualized using cBioPortal. In cBioPortal output, red indicates gains, blue indicates losses, and a darker color indicates a larger deviation from normal (i.e., a “deeper” deletion or higher-level amplification). Note that cBioPortal reports Y as having been lost, though the cell line is derived from a male patient with only X chromosomes constitutionally and therefore the Y chromosome was not present in the sample. | |||
|Source={{cite journal |title=CytoConverter: A web-based tool to convert karyotypes to genomic coordinates |journal=BMC Bioinformatics |author=Wang, J.; LaFramboise, T. |volume=20 |page=467 |year=2019 |doi=10.1186/s12859-019-3062-4}} | |||
|Author=Wang, J.; LaFramboise, T. | |||
|Date=2019 | |||
|Permission=[http://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International] | |||
}} | |||
== Licensing == | == Licensing == | ||
{{cc-by-4.0}} | {{cc-by-4.0}} | ||
Latest revision as of 22:49, 16 December 2019
Summary
| Description |
Fig. 2 CytoConverter output from a cancer cell line. The top panel shows a screenshot of CytoConverter as applied to the karyotype of the cell line AML-193. The output produced by our web tool is under “Text Result,” wherein the sample is referred to as “sample_1” by default. The bottom panel shows the results from microarray-based copy number analysis of AML-193, as performed in Barretina et al. and visualized using cBioPortal. In cBioPortal output, red indicates gains, blue indicates losses, and a darker color indicates a larger deviation from normal (i.e., a “deeper” deletion or higher-level amplification). Note that cBioPortal reports Y as having been lost, though the cell line is derived from a male patient with only X chromosomes constitutionally and therefore the Y chromosome was not present in the sample. |
|---|---|
| Source |
Wang, J.; LaFramboise, T. (2019). "CytoConverter: A web-based tool to convert karyotypes to genomic coordinates". BMC Bioinformatics 20: 467. doi:10.1186/s12859-019-3062-4. |
| Date |
2019 |
| Author |
Wang, J.; LaFramboise, T. |
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This work is licensed under the Creative Commons Attribution 4.0 License. |
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