Difference between revisions of "OpenChrom"
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OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal |journal=BMC Bioinformatics |year=2010 |volume=11 |pages=405 |title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data |author=Wenig, Philip; Odermatt, Juergen |url=http://www.biomedcentral.com/1471-2105/11/405 |doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web |url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 |title=Thomas Krenn Open Source Förderung 2010 |publisher=Thomas-Krenn.AG |date=30 June 2010 |accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web |url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php |title=Eclipse Community Awards Winners Announced |publisher=The Eclipse Foundation |date=21 March 2011 |accessdate=26 September 2012}}</ref> | OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal |journal=BMC Bioinformatics |year=2010 |volume=11 |pages=405 |title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data |author=Wenig, Philip; Odermatt, Juergen |url=http://www.biomedcentral.com/1471-2105/11/405 |doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web |url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 |title=Thomas Krenn Open Source Förderung 2010 |publisher=Thomas-Krenn.AG |date=30 June 2010 |accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web |url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php |title=Eclipse Community Awards Winners Announced |publisher=The Eclipse Foundation |date=21 March 2011 |accessdate=26 September 2012}}</ref> | ||
As of January 2024, it's not clear if source code is still being released in a versioned format. The last tagged/versioned source code on SourceForge is 1.3.0 and on GitHub is 1.1.0. The main website indicates there's a 1.5.0 version of the source code, but this doesn't appear on either SourceForge or GitHub. The Wikipedia page also seems to indicate there's a 1.5.0 release, as well as a 1.4.0 release, but it fails to cite any sources for those releases and associated release dates. | |||
==Features== | ==Features== | ||
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==External links== | ==External links== | ||
* [https://github.com/OpenChrom/openchrom OpenChrom on GitHub] | |||
* [https:// | |||
* [http://openchrom.wordpress.com/ OpenChrom blog] | * [http://openchrom.wordpress.com/ OpenChrom blog] | ||
==References== | ==References== | ||
Latest revision as of 19:10, 4 January 2024
 | |
| Developer(s) | OpenChrom development team |
|---|---|
| Initial release | April 12, 2010 (v0.1.0)[1][2] |
| Stable release |
1.3.0 (August 8, 2018) [±] |
| Preview release | 1.3.0-Prev (April 17, 2018) [±] |
| Written in | Java |
| Operating system | Multi-platform |
| Type |
Laboratory informatics software CDS software |
| License(s) | Eclipse Public License 1.0 |
| Website | OpenChrom.net |
OpenChrom is free extensible (via plug-ins) open-source chromatography and mass spectrometry software designed to natively handle mass spectrometry system data files.[3]
Product history
OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.[4] Version 0.1.0, the first public release, became available on April 12, 2010.[1] In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.[5] OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."[6]
As of January 2024, it's not clear if source code is still being released in a versioned format. The last tagged/versioned source code on SourceForge is 1.3.0 and on GitHub is 1.1.0. The main website indicates there's a 1.5.0 version of the source code, but this doesn't appear on either SourceForge or GitHub. The Wikipedia page also seems to indicate there's a 1.5.0 release, as well as a 1.4.0 release, but it fails to cite any sources for those releases and associated release dates.
Features
Features include[3]:
- native handling of chromatographic data
- data import and export
- batch processing
- baseline detection
- peak detection and integration
- filtering
- extensible via plug-ins
- advanced GUI
Hardware/software requirements
Current requirements include[7]:
- Java 7
- 1GB RAM
- 20GB HDD space
- 1GHz processor
Videos, screenshots, and other media
Videos:
- OpenChrom - the open source ChemStation alternative
- Chromatogram Batch Processing
- Chromatogram Filter
- Chromatogram Overlay
- Installing Plug-ins
- Manual Peak Detection
- Mass Spectrum Selection
- NIST Peak Identification
- Peak Detection
Screenshots can be found on the project website.
OpenChrom also has a number of available plug-ins.
Entities using OpenChrom
Further reading
- Wenig, Philip; Odermatt, Juergen (2011). "OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data". Journal of Analytical and Applied Pyrolysis 11: 405. doi:10.1186/1471-2105-11-405. http://www.biomedcentral.com/1471-2105/11/405.
- Wenig, Philip (2010). "Post-optimization of Py-GC/MS data: A case study using a new digital chemical noise reduction filter (NOISERA) to enhance the data quality utilizing OpenChrom mass spectrometric software". BMC Bioinformatics 92 (1): 202–208. doi:10.1016/j.jaap.2011.05.013. http://www.sciencedirect.com/science/article/pii/S0165237011001069.
External links
References
- ↑ 1.0 1.1 "OpenChrom - Files". Sourceforge. 12 April 2010. http://sourceforge.net/projects/openchrom/files/. Retrieved 26 September 2012.
- ↑ "OpenChrom Versions". Wenig, Philip. 27 March 2012. http://www.openchrom.net/dokuwiki/doku.php?id=openchrom_versions. Retrieved 26 September 2012.
- ↑ 3.0 3.1 "OpenChrom". Wenig, Philip. http://www.openchrom.net/. Retrieved 26 September 2012.
- ↑ Wenig, Philip; Odermatt, Juergen (2010). "OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data". BMC Bioinformatics 11: 405. doi:10.1186/1471-2105-11-405. http://www.biomedcentral.com/1471-2105/11/405.
- ↑ "Thomas Krenn Open Source Förderung 2010". Thomas-Krenn.AG. 30 June 2010. http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010. Retrieved 26 September 2012.
- ↑ "Eclipse Community Awards Winners Announced". The Eclipse Foundation. 21 March 2011. http://www.eclipse.org/org/press-release/20110321_awardwinners.php. Retrieved 26 September 2012.
- ↑ "OpenChrom System Prerequisites". Wenig, Philip. 27 March 2012. http://www.openchrom.net/dokuwiki/doku.php?id=system_prerequisites. Retrieved 26 September 2012.
