Difference between revisions of "BonsaiLIMS"
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| developer = Secluk Bozdag | | developer = Secluk Bozdag | ||
| released = {{Start date|2010|11|23}}<ref name="BonL1.0">{{cite web |url=http://sourceforge.net/projects/bonsailims/files/src/ |title=BonasaiLIMS - Home/SRC |publisher=SourceForge |date=23 November 2010 |accessdate=6 April 2012}}</ref> | | released = {{Start date|2010|11|23}}<ref name="BonL1.0">{{cite web |url=http://sourceforge.net/projects/bonsailims/files/src/ |title=BonasaiLIMS - Home/SRC |publisher=SourceForge |date=23 November 2010 |accessdate=6 April 2012}}</ref> | ||
| discontinued = | | discontinued = yes | ||
| | | latest release version = 1.0 | ||
| latest release date = {{Start date and age|2010|11|23}} | |||
| programming language = Python, Django | | programming language = Python, Django | ||
| operating system = Cross-platform | | operating system = Cross-platform | ||
| Line 19: | Line 20: | ||
| genre = [[Laboratory informatics]] software | | genre = [[Laboratory informatics]] software | ||
| license = GNU Lesser General Public License | | license = GNU Lesser General Public License | ||
| website = [http:// | | website = [http://www.scfbm.org/content/6/1/9 scfbm.org/content/6/1/9] | ||
}} | }} | ||
'''BonsaiLIMS''' | '''BonsaiLIMS''' was a free lightweight open-source [[laboratory information management system]] (LIMS) solution that "allows users to manage their studies and sample data though a secure web interface."<ref name="Bath1">{{cite journal |url=http://www.scfbm.org/content/6/1/9 |title=LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine |journal=Source Code for Biology and Medicine |author=Bath, Timothy G.; Selcuk Bozdag; Vackar Afzal; Daniel Crowther |publisher=BioMed Central Ltd. |date=13 May 2011 |volume=6 |issue=9 |accessdate=06 April 2012 |doi=10.1186/1751-0473-6-9}}</ref> The software was implemented as a module, which can then be embedded into a larger portal application via Django, a Python web framework.<ref name="Bath1" /> | ||
==Product history== | ==Product history== | ||
Members of the Translational Medicine Research Collaboration (TMRC), a partnership of several Scottish universities, pharmaceutical company Wyeth, and Scottish Enterprise<ref>{{cite web |url=http://news.bbc.co.uk/2/hi/uk_news/scotland/tayside_and_central/8010580.stm |title=£11.6m drug research lab opened |publisher=BBC News |date=21 April 2009 |accessdate=6 April 2012}}</ref>, needed an inexpensive and easy-to-implement [[laboratory informatics]] system for their research facility, so they decided to develop one to meet their requirements. Their | Members of the Translational Medicine Research Collaboration (TMRC), a partnership of several Scottish universities, pharmaceutical company Wyeth, and Scottish Enterprise<ref>{{cite web |url=http://news.bbc.co.uk/2/hi/uk_news/scotland/tayside_and_central/8010580.stm |title=£11.6m drug research lab opened |publisher=BBC News |date=21 April 2009 |accessdate=6 April 2012}}</ref>, needed an inexpensive and easy-to-implement [[laboratory informatics]] system for their research facility, so they decided to develop one to meet their requirements. Their goal was stated as wanting to<ref name="Bath1" />: | ||
* move bench scientists involved in translational research away from ad-hoc data recording | * move bench scientists involved in translational research away from ad-hoc data recording | ||
| Line 33: | Line 34: | ||
* improve collaboration between lab scientists | * improve collaboration between lab scientists | ||
A SourceForge project was created on November 23, 2010, the same day as its original public release.<ref name="BonL1.0" /> The project | A SourceForge project was created on November 23, 2010, the same day as its original public release.<ref name="BonL1.0" /> The project was never updated, however, and appears to be abandoned. | ||
==Features== | ==Features== | ||
The developers released a short | The developers released a short user guide on SourceForge detailing what the software does. | ||
==Hardware/software requirements== | ==Hardware/software requirements== | ||
Installation requirements and instructions are listed on the | Installation requirements and instructions are listed on the SourceForge page. | ||
==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
The | The user guide on SourceForge has a few screenshots of the software. | ||
==Entities using BonsaiLIMS== | ==Entities using BonsaiLIMS== | ||
| Line 52: | Line 53: | ||
* {{cite web |url=http://bonsailims.sourceforge.net/user_guide.pdf |title=BonsaiLIMS User Guide |publisher=Secluk Bozdag}} | * {{cite web |url=http://bonsailims.sourceforge.net/user_guide.pdf |title=BonsaiLIMS User Guide |publisher=Secluk Bozdag}} | ||
* {{cite journal | * {{cite journal |title=LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine |journal=Source Code for Biology and Medicine |author=Bath, Timothy G.; Selcuk Bozdag; Vackar Afzal; Daniel Crowther |volume=6 |pages=9 |year=2011 |doi=10.1186/1751-0473-6-9 |pmid=21569484 |pmc=PMC3113716}} | ||
==External links== | ==External links== | ||
BonsaiLIMS can be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software. | |||
==References== | ==References== | ||
| Line 62: | Line 63: | ||
<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:Discontinued or abandoned software (open source)]] | ||
Latest revision as of 16:39, 4 May 2021
 | |
| Developer(s) | Secluk Bozdag |
|---|---|
| Initial release | November 23, 2010[1] |
| Discontinued | 1.0 / November 23, 2010 |
| Written in | Python, Django |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | GNU Lesser General Public License |
| Website | scfbm.org/content/6/1/9 |
BonsaiLIMS was a free lightweight open-source laboratory information management system (LIMS) solution that "allows users to manage their studies and sample data though a secure web interface."[2] The software was implemented as a module, which can then be embedded into a larger portal application via Django, a Python web framework.[2]
Product history
Members of the Translational Medicine Research Collaboration (TMRC), a partnership of several Scottish universities, pharmaceutical company Wyeth, and Scottish Enterprise[3], needed an inexpensive and easy-to-implement laboratory informatics system for their research facility, so they decided to develop one to meet their requirements. Their goal was stated as wanting to[2]:
- move bench scientists involved in translational research away from ad-hoc data recording
- provide central management of lab data
- improve sample management
- improve collaboration between lab scientists
A SourceForge project was created on November 23, 2010, the same day as its original public release.[1] The project was never updated, however, and appears to be abandoned.
Features
The developers released a short user guide on SourceForge detailing what the software does.
Hardware/software requirements
Installation requirements and instructions are listed on the SourceForge page.
Videos, screenshots, and other media
The user guide on SourceForge has a few screenshots of the software.
Entities using BonsaiLIMS
Further reading
- "BonsaiLIMS User Guide". Secluk Bozdag. http://bonsailims.sourceforge.net/user_guide.pdf.
- Bath, Timothy G.; Selcuk Bozdag; Vackar Afzal; Daniel Crowther (2011). "LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine". Source Code for Biology and Medicine 6: 9. doi:10.1186/1751-0473-6-9. PMC PMC3113716. PMID 21569484. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113716.
External links
BonsaiLIMS can be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.
References
- ↑ 1.0 1.1 "BonasaiLIMS - Home/SRC". SourceForge. 23 November 2010. http://sourceforge.net/projects/bonsailims/files/src/. Retrieved 6 April 2012.
- ↑ 2.0 2.1 2.2 Bath, Timothy G.; Selcuk Bozdag; Vackar Afzal; Daniel Crowther (13 May 2011). "LimsPortal and BonsaiLIMS: development of a lab information management system for translational medicine". Source Code for Biology and Medicine (BioMed Central Ltd.) 6 (9). doi:10.1186/1751-0473-6-9. http://www.scfbm.org/content/6/1/9. Retrieved 06 April 2012.
- ↑ "£11.6m drug research lab opened". BBC News. 21 April 2009. http://news.bbc.co.uk/2/hi/uk_news/scotland/tayside_and_central/8010580.stm. Retrieved 6 April 2012.
