Difference between revisions of "OpenFreezer"
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| collapsible = | | collapsible = | ||
| author = | | author = | ||
| developer = Marina Olhovsky, [http://openfreezersoftware.lunenfeld.ca/about.html others] | | developer = Marina Olhovsky, [https://web.archive.org/web/20210621090323/http://openfreezersoftware.lunenfeld.ca/about.html others] | ||
| released = Start date unknown | | released = Start date unknown | ||
| discontinued = | | discontinued = Unknown | ||
| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | ||
| programming language = PHP, Python | | programming language = PHP, Python | ||
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}} | }} | ||
'''OpenFreezer''' | '''OpenFreezer''' was an open-source [[laboratory information management system]] (LIMS) designed to help biological laboratories with reagent tracking and workflow design. | ||
==Product history== | ==Product history== | ||
It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011<ref name="OFStart">{{cite web |url=http://sourceforge.net/projects/openfreezer/ |title=OpenFreezer |publisher=SourceForge |accessdate=02 October 2012}}</ref>, followed by a file release two days later.<ref name="OFSFFiles">{{cite web |url=http://sourceforge.net/projects/openfreezer/files/ |title=OpenFreezer - Files |publisher=SourceForge |accessdate=02 October 2012}}</ref>. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1<ref name="OFDemoDoc">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/docs.php |title=OpenFreezer - OpenFreezer Documentation |publisher=Marina Olhovsky |accessdate=26 August 2020}}</ref> | It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011<ref name="OFStart">{{cite web |url=http://sourceforge.net/projects/openfreezer/ |title=OpenFreezer |publisher=SourceForge |accessdate=02 October 2012}}</ref>, followed by a file release two days later.<ref name="OFSFFiles">{{cite web |url=http://sourceforge.net/projects/openfreezer/files/ |title=OpenFreezer - Files |publisher=SourceForge |accessdate=02 October 2012}}</ref>. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1<ref name="OFDemoDoc">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/docs.php |title=OpenFreezer - OpenFreezer Documentation |publisher=Marina Olhovsky |accessdate=26 August 2020}}</ref> | ||
The most current release is assumed to be version 3.2, release date unknown.<ref name="OFUGuide">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/open_manual.phphp |format=PDF |title=Manual For OpenFreezer Version 3.2 |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=December 2011 |accessdate=26 August 2020}}</ref> In February 2014, the developers placed a message on the site's front page that a new version was anticipated for "the end of 2014, and [it] will include batch reagent creation."<ref name="OFHome">{{cite web |url=http://openfreezer.org/ |archiveurl=https://web.archive.org/web/20140902050509/http://openfreezer.org/ |title=OpenFreezer |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=February 2014 |archivedate=02 September 2014 |accessdate=26 August 2020}}</ref> However, that update has not been realized as of August 2020. | The most current release is assumed to be version 3.2, release date unknown.<ref name="OFUGuide">{{cite web |url=http://openfreezersoftware.lunenfeld.ca/open_manual.phphp |format=PDF |title=Manual For OpenFreezer Version 3.2 |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=December 2011 |accessdate=26 August 2020}}</ref> In February 2014, the developers placed a message on the site's front page that a new version was anticipated for "the end of 2014, and [it] will include batch reagent creation."<ref name="OFHome">{{cite web |url=http://openfreezer.org/ |archiveurl=https://web.archive.org/web/20140902050509/http://openfreezer.org/ |title=OpenFreezer |publisher=Samuel Lunenfeld Research Institute, Mount Sinai Hospital |date=February 2014 |archivedate=02 September 2014 |accessdate=26 August 2020}}</ref> However, that update has not been realized as of August 2020. | ||
As of October 2023, the openfreezersoftware.lunenfeld.ca and openfreezer.org websites are both dead. There is no news for almost 10 years on the software, and though the Lunenfeld-Tanenbaum Research Institute in Toronto still has a web page showing they use the software<ref name="LTRISOPs">{{cite web |url=https://research.lunenfeld.ca/bsr/?page=812 |title=Biospecimen Repository and Processing Lab - Standard Operating Procedures |publisher=Lunenfeld-Tanenbaum Research Institute |date=2023 |accessdate=11 October 2023}}</ref>, its status as a publicly available, routinely updated open-source solution is presumed discontinued. | |||
==Features== | ==Features== | ||
Features of OpenFreezer | Features of OpenFreezer included<ref name="OFUGuide" />: | ||
* reagent and chemical management | * reagent and chemical management | ||
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==Hardware/software requirements== | ==Hardware/software requirements== | ||
Requirements for proper installation of OpenFreezer | Requirements for proper installation of OpenFreezer included: | ||
* [[MySQL]] version 5 or later | * [[MySQL]] version 5 or later | ||
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==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
* | * The [https://web.archive.org/web/20210621104913/http://openfreezersoftware.lunenfeld.ca/open_manual.php user guide] (archived; PDF) had extensive information, including screenshots of the program. | ||
==Entities using OpenFreezer== | ==Entities using OpenFreezer== | ||
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==Further reading== | ==Further reading== | ||
* {{cite journal |title=OpenFreezer: A reagent information management software system |journal=Nature Methods |author=Olhovsky, Marina; Williton, Kelly; Dai, Anna Yue; Pasculescu, Adrian; Lee,John Paul; Goudreault, Marilyn; Wells, Clark D.; Park, Jin Gyoon; Gingras, Anne-Claude; Linding, Rune; Pawson, Tony; Colwill, Karen |volume=8 |issue=8 |pages=612–613 |year=2011 |doi=10.1038/nmeth.1658 |pmid=21799493}} | * {{cite journal |title=OpenFreezer: A reagent information management software system |journal=Nature Methods |author=Olhovsky, Marina; Williton, Kelly; Dai, Anna Yue; Pasculescu, Adrian; Lee,John Paul; Goudreault, Marilyn; Wells, Clark D.; Park, Jin Gyoon; Gingras, Anne-Claude; Linding, Rune; Pawson, Tony; Colwill, Karen |volume=8 |issue=8 |pages=612–613 |year=2011 |doi=10.1038/nmeth.1658 |pmid=21799493}} | ||
==External links== | ==External links== | ||
* [https://github.com/rjeschmi/OpenFreezer A fork of OpenFreezer] on GitHub | * [https://github.com/rjeschmi/OpenFreezer A fork of OpenFreezer] on GitHub (last updated March 2015) | ||
* OpenFreezer can still be found on [https://sourceforge.net/p/openfreezer/home/Home/ SourceForge]. | |||
OpenFreezer can | |||
==References== | ==References== | ||
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<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:Discontinued or abandoned software (open source)]] | ||
Latest revision as of 17:47, 11 October 2023
 | |
| Developer(s) | Marina Olhovsky, others |
|---|---|
| Initial release | Start date unknown |
| Discontinued |
3.2 (Release date unknown) [±] |
| Preview release | none [±] |
| Written in | PHP, Python |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | GNU General Public License v3[1] |
| Website | openfreezersoftware.lunenfeld.ca |
OpenFreezer was an open-source laboratory information management system (LIMS) designed to help biological laboratories with reagent tracking and workflow design.
Product history
It's not clear when development first began on OpenFreezer, but a SourceForge project was started by developer Marina Olhovsky on July 18, 2011[2], followed by a file release two days later.[3]. According to the documentation page of the OpenFreezer demo site, the following releases have been made, though when they were released is unknown: 1.1.2, 1.1.3, 1.2, 1.3, 2.0, 3.0, 3.1[4]
The most current release is assumed to be version 3.2, release date unknown.[5] In February 2014, the developers placed a message on the site's front page that a new version was anticipated for "the end of 2014, and [it] will include batch reagent creation."[6] However, that update has not been realized as of August 2020.
As of October 2023, the openfreezersoftware.lunenfeld.ca and openfreezer.org websites are both dead. There is no news for almost 10 years on the software, and though the Lunenfeld-Tanenbaum Research Institute in Toronto still has a web page showing they use the software[7], its status as a publicly available, routinely updated open-source solution is presumed discontinued.
Features
Features of OpenFreezer included[5]:
- reagent and chemical management
- reagent and chemical tracking
- reagent-centered workflow tools
- project management
- user-based security
Hardware/software requirements
Requirements for proper installation of OpenFreezer included:
- MySQL version 5 or later
- PHP version 5 or later
- Apache web server
- Python version 2.4 or later
- BioPython
- ReportLab
- Overlib
Refer to the installation and setup guide for more information.
Videos, screenshots, and other media
- The user guide (archived; PDF) had extensive information, including screenshots of the program.
Entities using OpenFreezer
Further reading
- Olhovsky, Marina; Williton, Kelly; Dai, Anna Yue; Pasculescu, Adrian; Lee,John Paul; Goudreault, Marilyn; Wells, Clark D.; Park, Jin Gyoon; Gingras, Anne-Claude; Linding, Rune; Pawson, Tony; Colwill, Karen (2011). "OpenFreezer: A reagent information management software system". Nature Methods 8 (8): 612–613. doi:10.1038/nmeth.1658. PMID 21799493.
External links
- A fork of OpenFreezer on GitHub (last updated March 2015)
- OpenFreezer can still be found on SourceForge.
References
- ↑ "OpenFreezer - Download and Install Instructions". Marina Olhovsky. http://openfreezersoftware.lunenfeld.ca/download.html. Retrieved 26 August 2020.
- ↑ "OpenFreezer". SourceForge. http://sourceforge.net/projects/openfreezer/. Retrieved 02 October 2012.
- ↑ "OpenFreezer - Files". SourceForge. http://sourceforge.net/projects/openfreezer/files/. Retrieved 02 October 2012.
- ↑ "OpenFreezer - OpenFreezer Documentation". Marina Olhovsky. http://openfreezersoftware.lunenfeld.ca/demo/OpenFreezer/docs.php. Retrieved 26 August 2020.
- ↑ 5.0 5.1 "Manual For OpenFreezer Version 3.2" (PDF). Samuel Lunenfeld Research Institute, Mount Sinai Hospital. December 2011. http://openfreezersoftware.lunenfeld.ca/open_manual.phphp. Retrieved 26 August 2020.
- ↑ "OpenFreezer". Samuel Lunenfeld Research Institute, Mount Sinai Hospital. February 2014. Archived from the original on 02 September 2014. https://web.archive.org/web/20140902050509/http://openfreezer.org/. Retrieved 26 August 2020.
- ↑ "Biospecimen Repository and Processing Lab - Standard Operating Procedures". Lunenfeld-Tanenbaum Research Institute. 2023. https://research.lunenfeld.ca/bsr/?page=812. Retrieved 11 October 2023.
