Difference between revisions of "Template:Article of the week"

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(Updated article of the week text)
(Updated article of the week text)
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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Nieminen GigaScience2023 12.jpeg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Scroggie DigDisc2023 2.gif|240px]]</div>
'''"[[Journal:SODAR: Managing multiomics study data and metadata|SODAR: Managing multiomics study data and metadata]]"'''
'''"[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]"'''


Scientists employing omics in [[Life sciences industry|life science]] studies face challenges such as the modeling of multiassay studies, recording of all relevant parameters, and managing many [[Sample (material)|samples]] with their [[metadata]]. They must manage many large files that are the results of the assays or subsequent computation. Users with diverse backgrounds, ranging from computational scientists to wet-lab scientists, have dissimilar needs when it comes to data access, with programmatic interfaces being favored by the former and graphical ones by the latter. We introduce SODAR, the system for [[omics]] data access and retrieval. SODAR is a software package that addresses these challenges by providing a web-based graphical user interface (GUI) for managing multiassay studies and describing them using the ISA (Investigation, Study, Assay) data model and the ISA-Tab file format ... ('''[[Journal:SODAR: Managing multiomics study data and metadata|Full article...]]''')<br />
[[Electronic laboratory notebook]]s (ELNs) have expanded the utility of the paper [[laboratory notebook]] beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and [[Data integrity|integrity]]. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used [[LabTrove]] and [[LabArchives, LLC|LabArchives]] as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... ('''[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|Full article...]]''')<br />
''Recently featured'':
''Recently featured'':
{{flowlist |
{{flowlist |
* [[Journal:SODAR: Managing multiomics study data and metadata|SODAR: Managing multiomics study data and metadata]]
* [[Journal:Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records|Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records]]
* [[Journal:Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records|Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records]]
* [[Journal:A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for Trichinella spp.|A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for ''Trichinella spp.'']]
* [[Journal:A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for Trichinella spp.|A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for ''Trichinella spp.'']]
* [[Journal:Developing a framework for open and FAIR data management practices for next generation risk- and benefit assessment of fish and seafood|Developing a framework for open and FAIR data management practices for next generation risk- and benefit assessment of fish and seafood]]
}}
}}

Revision as of 16:20, 26 March 2024

Fig1 Scroggie DigDisc2023 2.gif

"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
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