Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Swine flu infection exponent by county June 2009.svg|200px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Scroggie DigDisc2023 2.gif|240px]]</div>
'''[[Infectious disease informatics]]''' ('''IDI''') is a multidisciplinary field of science that focuses on "the development of the science and technologies needed for collecting, sharing, reporting, analyzing, and visualizing infectious disease data and for providing data and decision-making support for infectious disease prevention, detection, and management." The field has expanded over time from analyzing [[public health laboratory]] data for potential disease vectors to a more robust syndromic surveillance of epidemiological factors and and to more advanced [[bioinformatics|bioinformatic]] approaches towards microbial, biomarker, and computational research.
'''"[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]"'''


Infectious disease informatics can help tackle problems and tasks such as optimizing developed antimicrobials, improving vaccines, discovering biomarkers for transmissibility and clinical outcomes of infectious diseases, and developing research into host-pathogen interactions. A few unique considerations must be made in IDI informatics applications, including the confidentiality of any included personal health information (PHI) and the non-binary nature of user access privileges. For example, public health director of a certain region may be able to contribute a dataset for analysis, but they'll have to ensure the right balance of PHI to meet local, state, and federal regulations. ('''[[Infectious disease informatics|Full article...]]''')<br />
[[Electronic laboratory notebook]]s (ELNs) have expanded the utility of the paper [[laboratory notebook]] beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and [[Data integrity|integrity]]. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used [[LabTrove]] and [[LabArchives, LLC|LabArchives]] as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... ('''[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|Full article...]]''')<br />
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''Recently featured'':
''Recently featured'': [[National Institute for Occupational Safety and Health]], [[Ambulatory surgery center]], [[Data center]]
{{flowlist |
* [[Journal:SODAR: Managing multiomics study data and metadata|SODAR: Managing multiomics study data and metadata]]
* [[Journal:Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records|Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records]]
* [[Journal:A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for Trichinella spp.|A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for ''Trichinella spp.'']]
}}

Revision as of 16:20, 26 March 2024

Fig1 Scroggie DigDisc2023 2.gif

"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
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