Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig5 Deroulers DiagnosticPath2013 8.jpg|220px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Tab1 Williamson F1000Res2023 10.png|240px]]</div>
'''"[[Journal:Analyzing huge pathology images with open source software|Analyzing huge pathology images with open source software]]"'''
'''"[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Data management challenges for artificial intelligence in plant and agricultural research]]"'''


Background: Digital pathology images are increasingly used both for diagnosis and research, because slide scanners are nowadays broadly available and because the quantitative study of these images yields new insights in systems biology. However, such virtual slides build up a technical challenge since the images occupy often several gigabytes and cannot be fully opened in a computer’s memory. Moreover, there is no standard format. Therefore, most common open source tools such as ImageJ fail at treating them, and the others require expensive hardware while still being prohibitively slow.
[[Artificial intelligence]] (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and [[Data visualization|visualize]] large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in [[Information management|data management]] that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of [[machine learning]] (ML), which holds much promise for this domain ... ('''[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Full article...]]''')<br />
 
''Recently featured'':
Results: We have developed several cross-platform open source software tools to overcome these limitations. The NDPITools provide a way to transform microscopy images initially in the loosely supported NDPI format into one or several standard TIFF files, and to create mosaics (division of huge images into small ones, with or without overlap) in various TIFF and JPEG formats. They can be driven through ImageJ plugins. The LargeTIFFTools achieve similar functionality for huge TIFF images which do not fit into RAM. We test the performance of these tools on several digital slides and compare them, when applicable, to standard software. A statistical study of the cells in a tissue sample from an oligodendroglioma was performed on an average laptop computer to demonstrate the efficiency of the tools. ('''[[Journal:Analyzing huge pathology images with open source software|Full article...]]''')<br />
{{flowlist |
 
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}}

Revision as of 17:50, 15 April 2024

Tab1 Williamson F1000Res2023 10.png

"Data management challenges for artificial intelligence in plant and agricultural research"

Artificial intelligence (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and visualize large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in data management that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of machine learning (ML), which holds much promise for this domain ... (Full article...)
Recently featured:

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