Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 OConnor BMCInformatics2010 11-12.jpg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Tab1 Williamson F1000Res2023 10.png|240px]]</div>
'''"[[Journal:SeqWare Query Engine: Storing and searching sequence data in the cloud|SeqWare Query Engine: Storing and searching sequence data in the cloud]]"'''
'''"[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Data management challenges for artificial intelligence in plant and agricultural research]]"'''


Since the introduction of next-generation DNA sequencers the rapid increase in [[Sequencing|sequencer]] throughput, and associated drop in costs, has resulted in more than a dozen human [[Genomics|genomes]] being resequenced over the last few years. These efforts are merely a prelude for a future in which genome resequencing will be commonplace for both biomedical research and clinical applications. The dramatic increase in sequencer output strains all facets of computational infrastructure, especially databases and query interfaces. The advent of cloud computing, and a variety of powerful tools designed to process petascale datasets, provide a compelling solution to these ever increasing demands.
[[Artificial intelligence]] (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and [[Data visualization|visualize]] large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in [[Information management|data management]] that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of [[machine learning]] (ML), which holds much promise for this domain ... ('''[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Full article...]]''')<br />
 
''Recently featured'':
In this work, we present the [[SeqWare]] Query Engine which has been created using modern cloud computing technologies and designed to support databasing information from thousands of genomes. Our backend implementation was built using the highly scalable, NoSQL HBase database from the Hadoop project. We also created a web-based frontend that provides both a programmatic and interactive query interface and integrates with widely used genome browsers and tools. ('''[[Journal:SeqWare Query Engine: Storing and searching sequence data in the cloud|Full article...]]''')<br />
{{flowlist |
 
* [[Journal:A blockchain-driven IoT-based food quality traceability system for dairy products using a deep learning model|A blockchain-driven IoT-based food quality traceability system for dairy products using a deep learning model]]
<br />
* [[Journal:Effect of good clinical laboratory practices (GCLP) quality training on knowledge, attitude, and practice among laboratory professionals: Quasi-experimental study|Effect of good clinical laboratory practices (GCLP) quality training on knowledge, attitude, and practice among laboratory professionals: Quasi-experimental study]]
''Recently featured'': [[Journal:SaDA: From sampling to data analysis—An extensible open source infrastructure for rapid, robust and automated management and analysis of modern ecological high-throughput microarray data|SaDA: From sampling to data analysis—An extensible open source infrastructure for rapid, robust and automated management and analysis of modern ecological high-throughput microarray data]], [[Journal:Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline|Launching genomics into the cloud: Deployment of Mercury, a next generation sequence analysis pipeline]], [[Journal:Benefits of the community for partners of open source vendors|Benefits of the community for partners of open source vendors]]
* [[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]
}}

Revision as of 17:50, 15 April 2024

Tab1 Williamson F1000Res2023 10.png

"Data management challenges for artificial intelligence in plant and agricultural research"

Artificial intelligence (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and visualize large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in data management that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of machine learning (ML), which holds much promise for this domain ... (Full article...)
Recently featured:

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