Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Mariette BMCGenomics2015 13.jpg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Tab1 Williamson F1000Res2023 10.png|240px]]</div>
'''"[[Journal:NG6: Integrated next generation sequencing storage and processing environment|NG6: Integrated next generation sequencing storage and processing environment]]"'''
'''"[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Data management challenges for artificial intelligence in plant and agricultural research]]"'''


Next generation [[sequencing]] platforms are now well implanted in sequencing centres and some [[Laboratory|laboratories]]. Upcoming smaller scale machines such as the 454 junior from Roche or the MiSeq from Illumina will increase the number of laboratories hosting a sequencer. In such a context, it is important to provide these teams with an easily manageable environment to store and process the produced reads.
[[Artificial intelligence]] (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and [[Data visualization|visualize]] large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in [[Information management|data management]] that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of [[machine learning]] (ML), which holds much promise for this domain ... ('''[[Journal:Data management challenges for artificial intelligence in plant and agricultural research|Full article...]]''')<br />
 
''Recently featured'':
We describe a user-friendly information system able to manage large sets of sequencing data. It includes, on one hand, a workflow environment already containing pipelines adapted to different input formats (sff, fasta, fastq and qseq), different sequencers (Roche 454, Illumina HiSeq) and various analyses (quality control, assembly, alignment, diversity studies,…) and, on the other hand, a secured web site giving access to the results. The connected user will be able to download raw and processed data and browse through the analysis result statistics. ('''[[Journal:NG6: Integrated next generation sequencing storage and processing environment|Full article...]]''')<br />
{{flowlist |
<br />
* [[Journal:A blockchain-driven IoT-based food quality traceability system for dairy products using a deep learning model|A blockchain-driven IoT-based food quality traceability system for dairy products using a deep learning model]]
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: ▪ [[Journal:STATegra EMS: An experiment management system for complex next-generation omics experiments|STATegra EMS: An experiment management system for complex next-generation omics experiments]]
* [[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]
: ▪ [[Journal:No specimen left behind: Industrial scale digitization of natural history collections|No specimen left behind: Industrial scale digitization of natural history collections]]
}}
: ▪ [[Journal:MaPSeq, a service-oriented architecture for genomics research within an academic biomedical research institution|MaPSeq, a service-oriented architecture for genomics research within an academic biomedical research institution]]

Revision as of 17:50, 15 April 2024

Tab1 Williamson F1000Res2023 10.png

"Data management challenges for artificial intelligence in plant and agricultural research"

Artificial intelligence (AI) is increasingly used within plant science, yet it is far from being routinely and effectively implemented in this domain. Particularly relevant to the development of novel food and agricultural technologies is the development of validated, meaningful, and usable ways to integrate, compare, and visualize large, multi-dimensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within plant science, the paper identifies and discusses eight key challenges in data management that must be addressed to further unlock the potential of AI in crop and agronomic research, and particularly the application of machine learning (ML), which holds much promise for this domain ... (Full article...)
Recently featured:

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