Difference between revisions of "User:Shawndouglas/sandbox/sublevel5"

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{{Infobox journal article
<div class="nonumtoc">__TOC__</div>
|name        =
{{ombox
|image        =
| type     = notice
|alt          = <!-- Alternative text for images -->
| style    = width: 960px;
|caption      =
| text     = This is sublevel5 of my sandbox, where I play with features and test MediaWiki code. If you wish to leave a comment for me, please see [[User_talk:Shawndouglas|my discussion page]] instead.<p></p>
|title_full  = Generalized Procedure for Screening Free Software and Open Source Software Applications
|journal     =
|authors      = Joyce, John
|affiliations = Arcana Informatica; Scientific Computing
|contact     = Email:  
|editors      =
|pub_year    = 2015
|vol_iss      =
|pages        =
|doi          =
|issn        =
|license      = [https://creativecommons.org/licenses/by-sa/4.0/ Creative Commons Attribution-ShareAlike 4.0 International]
|website      =
|download    =
}}
}}


This is the glossary for the article "Generalized Procedure for Screening Free Software and Open Source Software Applications," [[User:Shawndouglas/sandbox/sublevel4|found here]]. Some definitions have been pulled from ''Wikipedia'' in an attempt to keep all description nuances intact.
==Sandbox begins below==
 
{{raw:wikipedia::Detection limit}}
==Glossary==
{|
| STYLE="vertical-align:top;"|
{| class= border="0" cellpadding="5" cellspacing="0" width="100%"
|-
  ! Term
  ! Explanation
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|.ogg
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|File extension for Ogg Vorbis, an open-source patent-free audio compression format
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[21 CFR Part 11]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|United States Food and Drug Administration electronic records and electronic signatures rule
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[https://www.academia.edu/ Academia.edu]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A web site that allows academics to share research papers and exchange information
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|accuracy
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Defines how well the results of an analysis or measurement conforms to the actual or "correct" value
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|AEQ
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Analytical equipment qualification
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|agnostic
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A term applied to both hardware and software that indicates that the item is interoperable with different systems (The correct term should probably be "technology-independent" or "technology-neutral," but the use of the term "agnostic" appears to be well entrenched.)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|AHP
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Analytic hierarchy process (AHP), a structured technique developed by Thomas Saaty in the 1970s for organizing and analyzing complex decisions
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|AIQ
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Analytical instrument qualification (AIQ), a term used in the pharmaceutical industry for the process of ensuring that an instrument meets the requirements for its intended application
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Apache Hadoop YARN
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Yet Another Resource Negotiator (YARN), a technology for managing resources on a cluster of computers
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Apache Lucene
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A software library for information retrieval from fields of text contained within document files
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|ASE
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Adaptive Server Enterprise
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Audit trail]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A log of records documenting the sequence of activities that have been performed on a system
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|binary package distribution
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A compilation of the compiled version of a program and all related documentation designed for release to the end user
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|BREW
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Binary Runtime Environment for Wireless (BREW), a runtime and application development environment from Qualcomm that isolates portable applications from the hardware interface of mobile phones employing code division multiplex access (CDMA)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|BRR
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Business readiness rating
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Chromatography data management system|CDMS]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Chromatography data management system (CDMS)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|CFR
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|United States Code of Federal Regulations
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|change log
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A log documenting the changes made to a software product, which may include a list of new features, changes to behavior, or elimination of software bugs
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Chain of custody|COC]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Chain of custody (COC), a paper or electronic documentation trail that documents responsibility of a sample (This is required for legal reasons under various regulatory programs, and it also provides information used to track faulty or contaminated items back to their source.)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|committer
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|The person that represents the quality control of the community, controlling what changes are included in the originally licensed version, though users are free to make any changes they want in their own copies of the program
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Compiere]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A suite of open-source applications (for small- to medium-sized businesses) that provides a number of business support applications
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|copyleft
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|[https://en.wikipedia.org/w/index.php?title=Copyleft&oldid=674443822 Per ''Wikipedia'']:
<blockquote>Copyleft (a play on the word "copyright") is the practice of offering people the right to freely distribute copies and modified versions of a work with the stipulation that the same rights be preserved in derivative works down the line.
 
Copyleft is a form of licensing, and can be used to maintain copyright conditions for works ranging from computer software, to documents, to art. In general, copyright law is used by an author to prohibit recipients from reproducing, adapting, or distributing copies of their work. In contrast, under copyleft, an author may give every person who receives a copy of the work permission to reproduce, adapt, or distribute it, with the accompanying requirement that any resulting copies or adaptations are also bound by the same licensing agreement.
 
Copyleft licenses (for software) require that information necessary for reproducing and modifying the work must be made available to recipients of the binaries. The source code files will usually contain a copy of the license terms and acknowledge the author(s).
 
Copyleft type licenses are a novel use of existing copyright law to ensure a work remains freely available. The GNU General Public License, originally written by Richard Stallman, was the first software copyleft license to see extensive use, and continues to dominate in that area. Creative Commons, a non-profit organization founded by Lawrence Lessig, provides a similar license provision condition called ShareAlike.</blockquote>
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Cosmos
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|C# Open Source Managed Operating System
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|COTS
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Commercial, off-the-shelf
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[40 CFR Part 3|CROMERR]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Cross-Media Electronic Reporting Rule (CROMERR) (or typically 40 CFR Part 3), an Environmental Protection Agency (EPA) rule specifying how electronic reporting should be performed for the EPA's various regulatory programs
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Cygwin
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A collection of tools that emulate a Linux environment, allowing Linux applications to be compiled for and executed in a MS Windows environment
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|data loading
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|The loading of data into static tables, including test definitions, sample container descriptions, location information, etc.
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|database-agnostic
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Indicates an application capable of running with database systems from any vendor
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|digital commons
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Name given to a collaboratively developed online resource that is managed by a community of people
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|DMOZ
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Also known as the Open Directory Project (ODP), an attempt to create the largest human curated open-content directory of web links (Originates from one of its earlier domain names, directory.mozilla.org)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Docker
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A system designed to package an application with all of its dependencies into a standardized software container using an alternate architectural approach than a virtual machine, while providing similar resource isolation in a smaller footprint
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Documentation, Administrator
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Documentation for a system designed to be issued to a system administrator, providing information on configuring and operating the application
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Documentation, Developer
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Documentation for a system designed to be issued to a system developer, providing detailed information on how the system operates and is structured as well as how to alter the system code and extract data from the system in an ''ad hoc'' manner
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Documentation, User
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Documentation for a system designed to be issued to a user, helping to guide the user through using the application
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|DOI
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Digital object identifier (DOI), a character string identifier used to uniquely identify an electronic document (In many instances a scientific/technical publication will have a DOI printed on it, allowing you to access or purchase the article on-line; standardized under ISO 26324.)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Drizzle
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A MySQL 6.0-derived database optimized for cloud computing
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Drupal
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|An open-source application designed for creating and managing a variety of web sites
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Eclipse
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A Java-based integrated development environment that can be customized via use of community-developed plug-ins
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|EDD
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Electronic data delivery or electronic data deliverable
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Electronic health record|EHR]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Electronic health record
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Elasticsearch
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|An open-source search engine employing a RESTful (see REST) interface, built on Apache Lucene
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Electronic laboratory notebook|ELN]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Electronic laboratory notebook
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[[Electronic medical record|EMR]]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Electronic medical record
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[http://www.epa.gov/ EPA]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|United States Environmental Protection Agency
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|ERP
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Enterprise resource planning, typically constituting a variety of integrated applications, with a shared database, that integrates critical business functions such as accounting, human resources, customer relationship management, inventory and order tracking, etc. into a single system
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|F/OSS
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Free/open-source software (See FOSS)
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|FAME
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|Filter, Analyze, Measure, and Evaluate (FAME) methodology for evaluating open-source applications
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|[http://www.fda.gov/ FDA]
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|United States Food and Drug Administration
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Fedora
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|A version of the Linux operating system sponsored by Red Hat
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Firefox
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|One of a number of open-source web browsers that can be highly customized via the use of member-developed "plug-ins"
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|FLOSS
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|[https://en.wikipedia.org/w/index.php?title=Alternative_terms_for_free_software&oldid=679497590 Per ''Wikipedia'']:
<blockquote>The acronym FLOSS was coined in 2001 by Rishab Aiyer Ghosh for "free/libre and open-source software." Later that year, the European Commission (EC) used the phrase when they funded a study on the topic.
 
Unlike "libre software," which aimed to solve the ambiguity problem, FLOSS aimed to avoid taking sides in the debate over whether it was better to say "free software" or to say "open-source software"</blockquote>
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|FLOSShub
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|[http://flosshub.org/node/9 Per FLOSS Research Group]:
<blockquote>FLOSShub is a portal for free/libre and open source software (FLOSS) research resources and discussion. FLOSShub's goal is to provide a central location for connecting researchers and FLOSS community members to research papers, data, tools, and most importantly, community.</blockquote>
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Forge
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|[https://en.wikipedia.org/w/index.php?title=Forge_%28software%29&oldid=674218812 Per ''Wikipedia'']:
<blockquote>In FLOSS development communities, a forge is a web-based collaborative software platform for both developing and sharing computer applications. (The word derives from the metalworking forge, used for shaping metal parts.) A forge platform is generally able to host multiple independent projects.
 
For software developers it is a place to host, among others, source code (often version-controlled), bug database and documentation for their projects. For users, a forge is a repository of computer applications.
 
Software forges have become popular, and have proven successful as a software development model for a large number of software projects.
 
The term forge refers to a common prefix or suffix adopted by various platforms created after the example of SourceForge (such as GForge and FusionForge).</blockquote>
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Forking
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|The process where a group takes an open-source application's source code and starts developing it in an independent direction from the original program
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|FOSS
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|[https://en.wikipedia.org/w/index.php?title=Free_and_open-source_software&oldid=673395320 Per ''Wikipedia'']:
<blockquote>Free and open-source software (FOSS) is computer software that can be classified as both free software and open-source software. That is, anyone is freely licensed to use, copy, study, and change the software in any way, and the source code is openly shared so that people are encouraged to voluntarily improve the design of the software. This is in contrast to proprietary software, where the software is under restrictive copyright and the source code is usually hidden from the users.</blockquote>
|-
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px; vertical-align: text-top;"|Free software
  | style="background-color:white; padding-left:10px; padding-right:10px; padding-bottom:10px;"|See Software, Free
|-
|}
|}

Latest revision as of 18:25, 10 January 2024

Sandbox begins below

Template:Short description

The limit of detection (LOD or LoD) is the lowest signal, or the lowest corresponding quantity to be determined (or extracted) from the signal, that can be observed with a sufficient degree of confidence or statistical significance. However, the exact threshold (level of decision) used to decide when a signal significantly emerges above the continuously fluctuating background noise remains arbitrary and is a matter of policy and often of debate among scientists, statisticians and regulators depending on the stakes in different fields.

Significance in analytical chemistry

In analytical chemistry, the detection limit, lower limit of detection, also termed LOD for limit of detection or analytical sensitivity (not to be confused with statistical sensitivity), is the lowest quantity of a substance that can be distinguished from the absence of that substance (a blank value) with a stated confidence level (generally 99%).[1][2][3] The detection limit is estimated from the mean of the blank, the standard deviation of the blank, the slope (analytical sensitivity) of the calibration plot and a defined confidence factor (e.g. 3.2 being the most accepted value for this arbitrary value).[4] Another consideration that affects the detection limit is the adequacy and the accuracy of the model used to predict concentration from the raw analytical signal.[5]

As a typical example, from a calibration plot following a linear equation taken here as the simplest possible model:

where, corresponds to the signal measured (e.g. voltage, luminescence, energy, etc.), "Template:Mvar" the value in which the straight line cuts the ordinates axis, "Template:Mvar" the sensitivity of the system (i.e., the slope of the line, or the function relating the measured signal to the quantity to be determined) and "Template:Mvar" the value of the quantity (e.g. temperature, concentration, pH, etc.) to be determined from the signal ,[6] the LOD for "Template:Mvar" is calculated as the "Template:Mvar" value in which equals to the average value of blanks "Template:Mvar" plus "Template:Mvar" times its standard deviation "Template:Mvar" (or, if zero, the standard deviation corresponding to the lowest value measured) where "Template:Mvar" is the chosen confidence value (e.g. for a confidence of 95% it can be considered Template:Mvar = 3.2, determined from the limit of blank).[4]

Thus, in this didactic example:

There are a number of concepts derived from the detection limit that are commonly used. These include the instrument detection limit (IDL), the method detection limit (MDL), the practical quantitation limit (PQL), and the limit of quantitation (LOQ). Even when the same terminology is used, there can be differences in the LOD according to nuances of what definition is used and what type of noise contributes to the measurement and calibration.[7]

The figure below illustrates the relationship between the blank, the limit of detection (LOD), and the limit of quantitation (LOQ) by showing the probability density function for normally distributed measurements at the blank, at the LOD defined as 3 × standard deviation of the blank, and at the LOQ defined as 10 × standard deviation of the blank. (The identical spread along Abscissa of these two functions is problematic.) For a signal at the LOD, the alpha error (probability of false positive) is small (1%). However, the beta error (probability of a false negative) is 50% for a sample that has a concentration at the LOD (red line). This means a sample could contain an impurity at the LOD, but there is a 50% chance that a measurement would give a result less than the LOD. At the LOQ (blue line), there is minimal chance of a false negative.

Template:Wide image

Instrument detection limit

Most analytical instruments produce a signal even when a blank (matrix without analyte) is analyzed. This signal is referred to as the noise level. The instrument detection limit (IDL) is the analyte concentration that is required to produce a signal greater than three times the standard deviation of the noise level. This may be practically measured by analyzing 8 or more standards at the estimated IDL then calculating the standard deviation from the measured concentrations of those standards.

The detection limit (according to IUPAC) is the smallest concentration, or the smallest absolute amount, of analyte that has a signal statistically significantly larger than the signal arising from the repeated measurements of a reagent blank.

Mathematically, the analyte's signal at the detection limit () is given by:

where, is the mean value of the signal for a reagent blank measured multiple times, and is the known standard deviation for the reagent blank's signal.

Other approaches for defining the detection limit have also been developed. In atomic absorption spectrometry usually the detection limit is determined for a certain element by analyzing a diluted solution of this element and recording the corresponding absorbance at a given wavelength. The measurement is repeated 10 times. The 3σ of the recorded absorbance signal can be considered as the detection limit for the specific element under the experimental conditions: selected wavelength, type of flame or graphite oven, chemical matrix, presence of interfering substances, instrument... .

Method detection limit

Often there is more to the analytical method than just performing a reaction or submitting the analyte to direct analysis. Many analytical methods developed in the laboratory, especially these involving the use of a delicate scientific instrument, require a sample preparation, or a pretreatment of the samples prior to being analysed. For example, it might be necessary to heat a sample that is to be analyzed for a particular metal with the addition of acid first (digestion process). The sample may also be diluted or concentrated prior to analysis by means of a given instrument. Additional steps in an analysis method add additional opportunities for errors. Since detection limits are defined in terms of errors, this will naturally increase the measured detection limit. This "global" detection limit (including all the steps of the analysis method) is called the method detection limit (MDL). The practical way for determining the MDL is to analyze seven samples of concentration near the expected limit of detection. The standard deviation is then determined. The one-sided Student's t-distribution is determined and multiplied versus the determined standard deviation. For seven samples (with six degrees of freedom) the t value for a 99% confidence level is 3.14. Rather than performing the complete analysis of seven identical samples, if the Instrument Detection Limit is known, the MDL may be estimated by multiplying the Instrument Detection Limit, or Lower Level of Detection, by the dilution prior to analyzing the sample solution with the instrument. This estimation, however, ignores any uncertainty that arises from performing the sample preparation and will therefore probably underestimate the true MDL.

Limit of each model

The issue of limit of detection, or limit of quantification, is encountered in all scientific disciplines. This explains the variety of definitions and the diversity of juridiction specific solutions developed to address preferences. In the simplest cases as in nuclear and chemical measurements, definitions and approaches have probably received the clearer and the simplest solutions. In biochemical tests and in biological experiments depending on many more intricate factors, the situation involving false positive and false negative responses is more delicate to handle. In many other disciplines such as geochemistry, seismology, astronomy, dendrochronology, climatology, life sciences in general, and in many other fields impossible to enumerate extensively, the problem is wider and deals with signal extraction out of a background of noise. It involves complex statistical analysis procedures and therefore it also depends on the models used,[5] the hypotheses and the simplifications or approximations to be made to handle and manage uncertainties. When the data resolution is poor and different signals overlap, different deconvolution procedures are applied to extract parameters. The use of different phenomenological, mathematical and statistical models may also complicate the exact mathematical definition of limit of detection and how it is calculated. This explains why it is not easy to come to a general consensus, if any, about the precise mathematical definition of the expression of limit of detection. However, one thing is clear: it always requires a sufficient number of data (or accumulated data) and a rigorous statistical analysis to render better signification statistically.

Limit of quantification

The limit of quantification (LoQ, or LOQ) is the lowest value of a signal (or concentration, activity, response...) that can be quantified with acceptable precision and accuracy.

The LoQ is the limit at which the difference between two distinct signals / values can be discerned with a reasonable certainty, i.e., when the signal is statistically different from the background. The LoQ may be drastically different between laboratories, so another detection limit is commonly used that is referred to as the Practical Quantification Limit (PQL).

See also

References

  1. IUPAC, Compendium of Chemical Terminology, 2nd ed. (the "Gold Book") (1997). Online corrected version:  (2006–) "detection limit".
  2. "Guidelines for Data Acquisition and Data Quality Evaluation in Environmental Chemistry". Analytical Chemistry 52 (14): 2242–49. 1980. doi:10.1021/ac50064a004. 
  3. Saah AJ, Hoover DR (1998). "[Sensitivity and specificity revisited: significance of the terms in analytic and diagnostic language."]. Ann Dermatol Venereol 125 (4): 291–4. PMID 9747274. https://pubmed.ncbi.nlm.nih.gov/9747274. 
  4. 4.0 4.1 "Limit of blank, limit of detection and limit of quantitation". The Clinical Biochemist. Reviews 29 Suppl 1 (1): S49–S52. August 2008. PMC 2556583. PMID 18852857. https://www.ncbi.nlm.nih.gov/pmc/articles/2556583. 
  5. 5.0 5.1 "R: "Detection" limit for each model" (in English). search.r-project.org. https://search.r-project.org/CRAN/refmans/bioOED/html/calculate_limit.html. 
  6. "Signal enhancement on gold nanoparticle-based lateral flow tests using cellulose nanofibers". Biosensors & Bioelectronics 141: 111407. September 2019. doi:10.1016/j.bios.2019.111407. PMID 31207571. http://ddd.uab.cat/record/218082. 
  7. Long, Gary L.; Winefordner, J. D., "Limit of detection: a closer look at the IUPAC definition", Anal. Chem. 55 (7): 712A–724A, doi:10.1021/ac00258a724 

Further reading

  • "Limits for qualitative detection and quantitative determination. Application to radiochemistry". Analytical Chemistry 40 (3): 586–593. 1968. doi:10.1021/ac60259a007. ISSN 0003-2700. 

External links

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