Difference between revisions of "Vendor:GenoLogics Life Sciences Software Inc."

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|industry          =  [[Laboratory informatics]]
|industry          =  [[Laboratory informatics]]
|genre            =
|genre            =
|fate              =  
|fate              = Acquired
|predecessor      =
|predecessor      =
|successor        =  
|successor        =  
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|foundation        =   
|foundation        =   
|founder          =   
|founder          =   
|defunct          =
|defunct          = September 9, 2015<ref name="CorpCanadaSearch">{{cite web |url=https://www.ic.gc.ca/app/scr/cc/CorporationsCanada/fdrlCrpSrch.html |title=Search for a Federal Corporation |work=Corporations Canada |publisher=Government of Canada |accessdate=20 August 2020 |quote=Search for "GenoLogics" or corporation # 419893-0}}</ref>
|location_city    =  4464 Markham St., Suite 2302, Victoria, British Columbia
|location_city    =  4464 Markham St., Suite 2302, Victoria, British Columbia
|location_country  =  Canada
|location_country  =  Canada
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|owner            =   
|owner            =   
|num_employees    =  60<ref name="GenoLogicsInfo">{{cite web |url=http://genologics.com/sites/default/files/pdf/genl_7492-corpfactsheet.pdf |format=PDF |title=Corporate Backgrounder - GenoLogics Life Sciences Software |publisher=GenoLogics Life Sciences Software Inc |date=2012 |accessdate=09 April 2013}}</ref>
|num_employees    =  60<ref name="GenoLogicsInfo">{{cite web |url=http://genologics.com/sites/default/files/pdf/genl_7492-corpfactsheet.pdf |format=PDF |title=Corporate Backgrounder - GenoLogics Life Sciences Software |publisher=GenoLogics Life Sciences Software Inc |date=2012 |accessdate=09 April 2013}}</ref>
|parent            =  [[Illumina, Inc.]]
|parent            =  [[Vendor:Illumina, Inc.|Illumina, Inc.]]
|divisions        =
|divisions        =
|subsid            =
|subsid            =
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|intl              =  Yes
|intl              =  Yes
}}
}}
'''GenoLogics Life Sciences Software''' develops and distributes [[laboratory informatics]] software, with a strong focus on the life sciences, especially genomics and proteomics.
'''GenoLogics Life Sciences Software''' developed and distributed [[laboratory informatics]] software, with a strong focus on the life sciences, especially genomics and proteomics.


==History==
==History==
GenoLogics was founded in 2002 as a privately-held company in Victoria, British Columbia, Canada.<ref name="CorpProfileArch02">{{cite web |url=http://www.genologics.com/PDFs/GLS%20Corporate%20Profile.pdf |archiveurl=https://web.archive.org/web/20031004070002/http://www.genologics.com/PDFs/GLS%20Corporate%20Profile.pdf |format=PDF |title=GLS GenoLogics Corporate Profile |publisher=GenoLogics Life Sciences Software Inc |date=2002 |archivedate=04 October 2003 |accessdate=03 April 2015}}</ref> One of its first products was Proteus, a [[laboratory information management system]] (LIMS) for proteomics; it was beta tested by eight facilities in the fall of 2003 before eventually being released to the market in 2004.<ref name="GLArch03">{{cite web |url=http://genologics.com/ |archiveurl=https://web.archive.org/web/20031007091007/http://genologics.com/ |title=Welcome to GenoLogics |publisher=GenoLogics Life Sciences Software Inc |date=2003 |archivedate=07 October 2003 |accessdate=03 April 2015}}</ref><ref name="GLHist">{{cite web |url=https://www.genologics.com/company/about/history |title=GenoLogics History |publisher=GenoLogics Life Sciences Software Inc |accessdate=03 April 2015}}</ref> In October of that year GenoLogics also released its Omix LIMS for systems biology research<ref name="GLArch04">{{cite web |url=http://www.genologics.com/products/omixlims/ |archiveurl=https://web.archive.org/web/20041021025112/http://www.genologics.com/products/omixlims/ |title=Omix Platform |publisher=GenoLogics Life Sciences Software Inc |date=2004 |archivedate=21 October 2004 |accessdate=03 April 2015}}</ref>, followed by the June 2006 development announcement of its Geneus LIMS for genomics.<ref name="GLArch06">{{cite web |url=http://www.genologics.com/products/geneus/index.php |archiveurl=https://web.archive.org/web/20060814022716/http://www.genologics.com/products/geneus/index.php |title=GenoLogics Geneus Introduction - Lab Information and Data Management for Genomics Research |publisher=GenoLogics Life Sciences Software Inc |date=26 June 2006 |archivedate=14 August 2006 |accessdate=03 April 2015}}</ref>
GenoLogics was founded in 2002 as a privately-held company in Victoria, British Columbia, Canada.<ref name="CorpProfileArch02">{{cite web |url=http://www.genologics.com/PDFs/GLS%20Corporate%20Profile.pdf |archiveurl=https://web.archive.org/web/20031004070002/http://www.genologics.com/PDFs/GLS%20Corporate%20Profile.pdf |format=PDF |title=GLS GenoLogics Corporate Profile |publisher=GenoLogics Life Sciences Software Inc |date=2002 |archivedate=04 October 2003 |accessdate=03 April 2015}}</ref> One of its first products was Proteus, a [[laboratory information management system]] (LIMS) for proteomics; it was beta tested by eight facilities in the fall of 2003 before eventually being released to the market in 2004.<ref name="GLArch03">{{cite web |url=http://genologics.com/ |archiveurl=https://web.archive.org/web/20031007091007/http://genologics.com/ |title=Welcome to GenoLogics |publisher=GenoLogics Life Sciences Software Inc |date=2003 |archivedate=07 October 2003 |accessdate=03 April 2015}}</ref><ref name="GLHist">{{cite web |url=https://www.genologics.com/company/about/history |title=GenoLogics History |publisher=GenoLogics Life Sciences Software Inc |accessdate=03 April 2015}}</ref> In October of that year GenoLogics also released its Omix LIMS for systems biology research<ref name="GLArch04">{{cite web |url=http://www.genologics.com/products/omixlims/ |archiveurl=https://web.archive.org/web/20041021025112/http://www.genologics.com/products/omixlims/ |title=Omix Platform |publisher=GenoLogics Life Sciences Software Inc |date=2004 |archivedate=21 October 2004 |accessdate=03 April 2015}}</ref>, followed by the June 2006 development announcement of its Geneus LIMS for genomics.<ref name="GLArch06">{{cite web |url=http://www.genologics.com/products/geneus/index.php |archiveurl=https://web.archive.org/web/20060814022716/http://www.genologics.com/products/geneus/index.php |title=GenoLogics Geneus Introduction - Lab Information and Data Management for Genomics Research |publisher=GenoLogics Life Sciences Software Inc |date=26 June 2006 |archivedate=14 August 2006 |accessdate=03 April 2015}}</ref>


In November 2008, GenoLogics announced it would begin a collaboration with [[Illumina, Inc.]] to supply its Geneus software for Illumina's hardware sequencing platform, then called Genome Analyzer.<ref name="GLArch08">{{cite web |url=http://www.genologics.com/about-us/press-release/illumina-partner |archiveurl=https://web.archive.org/web/20090106200939/http://www.genologics.com/about-us/press-release/illumina-partner |title=Illumina Selects GenoLogics as Next Generation Sequencing Lab & Data Management Partner |publisher=GenoLogics Life Sciences Software Inc |date=12 November 2008 |archivedate=06 January 2009 |accessdate=03 April 2015}}</ref> A similar collaboration was agreed upon with [[Applied Biosystems, Inc.]] the following year.<ref name="GLPR09AB">{{cite web |url=https://genologics.com/company/news/genologics-teams-applied-biosystems-lab-data-management-solution-next-generation |title=GenoLogics Teams with Applied Biosystems on Lab & Data Management Solution for Next Generation Sequencing |publisher=GenoLogics Life Sciences Software Inc |date=06 April 2009 |accessdate=03 April 2015}}</ref>
In November 2008, GenoLogics announced it would begin a collaboration with [[Vendor:Illumina, Inc.|Illumina, Inc.]] to supply its Geneus software for Illumina's hardware sequencing platform, then called Genome Analyzer.<ref name="GLArch08">{{cite web |url=http://www.genologics.com/about-us/press-release/illumina-partner |archiveurl=https://web.archive.org/web/20090106200939/http://www.genologics.com/about-us/press-release/illumina-partner |title=Illumina Selects GenoLogics as Next Generation Sequencing Lab & Data Management Partner |publisher=GenoLogics Life Sciences Software Inc |date=12 November 2008 |archivedate=06 January 2009 |accessdate=03 April 2015}}</ref> A similar collaboration was agreed upon with [[Vendor:Applied Biosystems, Inc.|Applied Biosystems, Inc.]] the following year.<ref name="GLPR09AB">{{cite web |url=https://genologics.com/company/news/genologics-teams-applied-biosystems-lab-data-management-solution-next-generation |title=GenoLogics Teams with Applied Biosystems on Lab & Data Management Solution for Next Generation Sequencing |publisher=GenoLogics Life Sciences Software Inc |date=06 April 2009 |accessdate=03 April 2015}}</ref><ref name="JonesGenoLogics09">{{cite web |url=https://www.limsforum.com/genologics-teams-with-applied-biosystems-on-lab-amp-data-management-solution-for-next-generation-sequencing/51976/ |title=GenoLogics Teams with Applied Biosystems on Lab & Data Management Solution for Next Generation Sequencing |author=Jones, C. |work=LIMSForum |date=08 April 2009 |accessdate=20 August 2020}}</ref>


In July 2011, GenoLogics phased out its Geneus, Omix, and Proteus software in favor of its new GenoLogics LIMS product.<ref name="GLArch11_01">{{cite web |url=http://www.genologics.com/ |archiveurl=https://web.archive.org/web/20110513095055/http://www.genologics.com/ |title=GenoLogics |date=May 2011 |archivedate=13 May 2011 |accessdate=03 April 2015}}</ref><ref name="GLArch11_02">{{cite web |url=http://www.genologics.com/genologics-lims |archiveurl=https://web.archive.org/web/20110711085004/http://www.genologics.com/genologics-lims |title=Introducing the GenoLogics LIMS |date=July 2011 |archivedate=11 July 2011 |accessdate=03 April 2015}}</ref> A few months before this transition, GenoLogics reaffirmed its collaboration with Illumina, stating that it's new GenoLogics LIMS would be incorporated in Illumina's next series of hardware sequencing platforms.<ref name="GLArch11_03">{{cite web |url=http://www.genologics.com/news/genologics-launches-lims-pre-configured-illumina-next-gen-sequencing-systems-and-sample-prep |archiveurl=https://web.archive.org/web/20110711085620/http://www.genologics.com/news/genologics-launches-lims-pre-configured-illumina-next-gen-sequencing-systems-and-sample-prep |title=GenoLogics Launches LIMS Pre-Configured for Illumina Next-Gen Sequencing Systems and Sample Prep Kits |date=May 2011 |archivedate=11 July 2011 |accessdate=03 April 2015}}</ref> The GenoLogics LIMS was rebranded in October 2012 as Clarity LIMS.<ref name="CLAnn">{{cite web |url=http://www.genologics.com/press-release-oct-08-2012 |title=GenoLogics Unveils Clarity LIMS for CLIA-Certified Next Generation Sequencing Labs |date=09 October 2012 |accessdate=10 April 2013}}</ref>
In July 2011, GenoLogics phased out its Geneus, Omix, and Proteus software in favor of its new GenoLogics LIMS product.<ref name="GLArch11_01">{{cite web |url=http://www.genologics.com/ |archiveurl=https://web.archive.org/web/20110513095055/http://www.genologics.com/ |title=GenoLogics |date=May 2011 |archivedate=13 May 2011 |accessdate=03 April 2015}}</ref><ref name="GLArch11_02">{{cite web |url=http://www.genologics.com/genologics-lims |archiveurl=https://web.archive.org/web/20110711085004/http://www.genologics.com/genologics-lims |title=Introducing the GenoLogics LIMS |date=July 2011 |archivedate=11 July 2011 |accessdate=03 April 2015}}</ref> A few months before this transition, GenoLogics reaffirmed its collaboration with Illumina, stating that it's new GenoLogics LIMS would be incorporated in Illumina's next series of hardware sequencing platforms.<ref name="GLArch11_03">{{cite web |url=http://www.genologics.com/news/genologics-launches-lims-pre-configured-illumina-next-gen-sequencing-systems-and-sample-prep |archiveurl=https://web.archive.org/web/20110711085620/http://www.genologics.com/news/genologics-launches-lims-pre-configured-illumina-next-gen-sequencing-systems-and-sample-prep |title=GenoLogics Launches LIMS Pre-Configured for Illumina Next-Gen Sequencing Systems and Sample Prep Kits |date=May 2011 |archivedate=11 July 2011 |accessdate=03 April 2015}}</ref> The GenoLogics LIMS was rebranded in October 2012 as Clarity LIMS.<ref name="CLAnn">{{cite web |url=http://www.genologics.com/press-release-oct-08-2012 |archiveurl=https://web.archive.org/web/20140824065821/http://genologics.com/press-release-oct-08-2012 |title=GenoLogics Unveils Clarity LIMS for CLIA-Certified Next Generation Sequencing Labs |archivedate=24 August 2014 |date=09 October 2012 |accessdate=20 August 2020}}</ref>


In September 2014, GenoLogics again renewed its collaboration with Illumina, this time announcing its Clarity LIMS would be integrated into Illumina's new HiSeq X Ten hardware sequencing platforms. GenoLogics also announced "Illumina will be using GenoLogics’ LIMS to support its collaboration with Genomics England to sequence 100,000 genomes."<ref name="GLPR14Ill">{{cite web |url=https://www.genologics.com/company/news/genologics-enters-agreement-illumina-provide-laboratory-information-system-hiseq-x-ten |title=GenoLogics Enters Agreement with Illumina to Provide Laboratory Information System for HiSeq X Ten System |publisher=GenoLogics Life Sciences Software Inc |date=04 September 2014 |accessdate=03 April 2015}}</ref> In February 2015, GenoLogics announced it would be expanding its operations into California citing "increased demand for informatics among labs conducting translational and clinical genomics."<ref name="GLExpansionPR15">{{cite web |url=http://www.businesswire.com/news/home/20150224005152/en/GenoLogics-Announces-Expansion |title=GenoLogics Announces Expansion |publisher=Business Wire |date=24 February 2015 |accessdate=03 April 2015}}</ref>
In September 2014, GenoLogics again renewed its collaboration with Illumina, this time announcing its Clarity LIMS would be integrated into Illumina's new HiSeq X Ten hardware sequencing platforms. GenoLogics also announced "Illumina will be using GenoLogics’ LIMS to support its collaboration with Genomics England to sequence 100,000 genomes."<ref name="GLPR14Ill">{{cite web |url=https://www.genologics.com/company/news/genologics-enters-agreement-illumina-provide-laboratory-information-system-hiseq-x-ten |archiveurl=https://web.archive.org/web/20150618004228/http://www.genologics.com/company/news/genologics-enters-agreement-illumina-provide-laboratory-information-system-hiseq-x-ten |title=GenoLogics Enters Agreement with Illumina to Provide Laboratory Information System for HiSeq X Ten System |publisher=GenoLogics Life Sciences Software Inc |archivedate=18 June 2015 |date=04 September 2014 |accessdate=20 August 2020}}</ref> In February 2015, GenoLogics announced it would be expanding its operations into California citing "increased demand for informatics among labs conducting translational and clinical genomics."<ref name="GLExpansionPR15">{{cite web |url=http://www.businesswire.com/news/home/20150224005152/en/GenoLogics-Announces-Expansion |title=GenoLogics Announces Expansion |publisher=Business Wire |date=24 February 2015 |accessdate=03 April 2015}}</ref>


In an August 2015 press release, Illumina announced it had agreed to acquire GenoLogics, which would become part of the Illumina Enterprise Informatics business.<ref name="IllGLAcquis">{{cite web |url=https://www.illumina.com/company/news-center/press-releases/press-release-details.html?newsid=2075626 |title=Illumina Signs Agreement to Acquire GenoLogics, Leader in Genomics Laboratory Information Management System Market |publisher=Illumina, Inc |date=05 August 2015 |accessdate=20 October 2015}}</ref> In March or April 2016, GenoLogics changed the name of Clarity LIMS to "BaseSpace Clarity LIMS."<ref name="CLFebArch">{{cite web |url=http://www.genologics.com/clarity-lims/ |archiveurl=https://web.archive.org/web/20160223201443/http://www.genologics.com/clarity-lims/ |title=Clarity LIMS |publisher=GenoLogics Life Sciences Software Inc |archivedate=23 February 2016 |accessdate=15 July 2016}}</ref><ref name="CLAprArch">{{cite web |url=http://www.genologics.com/clarity-lims/ |archiveurl=https://web.archive.org/web/20160412164615/http://www.genologics.com/clarity-lims/ |title=BaseSpace Clarity LIMS |publisher=GenoLogics Life Sciences Software Inc |archivedate=12 April 2016 |accessdate=15 July 2016}}</ref>
In an August 2015 press release, Illumina announced it had agreed to acquire GenoLogics, which would become part of the Illumina Enterprise Informatics business.<ref name="IllGLAcquis">{{cite web |url=https://www.illumina.com/company/news-center/press-releases/press-release-details.html?newsid=2075626 |title=Illumina Signs Agreement to Acquire GenoLogics, Leader in Genomics Laboratory Information Management System Market |publisher=Illumina, Inc |date=05 August 2015 |accessdate=20 October 2015}}</ref>  


==Technology and products==
GenoLogics was formally discontinued as a legal entity in Canada on September 9, 2015.<ref name="CorpCanadaSearch" />
===BaseSpace Clarity LIMS===
BaseSpace Clarity LIMS is a [[laboratory information management system]] (LIMS) for [[genomics]] and [[mass spectrometry]] laboratories. It comes in several versions: Gold, "built specifically for the needs of clinical or research, genomics and mass spec laboratories,"<ref name="CLGAbout">{{cite web |url=http://www.genologics.com/claritylims |title=Clarity LIMS Gold |publisher=GenoLogics Life Sciences Software Inc |accessdate=09 September 2014}}</ref> and Silver, "built specifically for the needs of clinical medium-sized to large-sized commercial or core genomics laboratories."<ref name="CLSAbout">{{cite web |url=http://www.genologics.com/clarity-lims-silver |title=Clarity LIMS Silver |publisher=GenoLogics Life Sciences Software Inc |accessdate=09 September 2014}}</ref> Both versions are available for on-premises installation or hosting under the [[software as a service|SaaS]] model.<ref name="CLCloud">{{cite web |url=http://www.genologics.com/features_article/cloud/ |title=Cloud-based LIMS |publisher=GenoLogics Life Sciences Software Inc |accessdate=05 October 2016}}</ref>


====Features====
In March or April 2016, "GenoLogics, an Illumina company" changed the name of Clarity LIMS to "BaseSpace Clarity LIMS."<ref name="CLFebArch">{{cite web |url=http://www.genologics.com/clarity-lims/ |archiveurl=https://web.archive.org/web/20160223201443/http://www.genologics.com/clarity-lims/ |title=Clarity LIMS |publisher=GenoLogics Life Sciences Software Inc |archivedate=23 February 2016 |accessdate=15 July 2016}}</ref><ref name="CLAprArch">{{cite web |url=http://www.genologics.com/clarity-lims/ |archiveurl=https://web.archive.org/web/20160412164615/http://www.genologics.com/clarity-lims/ |title=BaseSpace Clarity LIMS |publisher=GenoLogics Life Sciences Software Inc |archivedate=12 April 2016 |accessdate=15 July 2016}}</ref>


{{Ombox productfeature}}
Sometime in early 2020, the GenoLogics website was shut down<ref name="IAGenoLogics">{{cite web |url=https://web.archive.org/web/*/http://www.genologics.com/ |title=http://www.genologics.com/ |work=Wayback Machine |publisher=Internet Archive |accessdate=20 August 2020}}</ref>, perhaps signaling that the last remnants of the GenoLogics name were disappearing.


==Technology and products==
===BaseSpace Clarity LIMS===
The GenoLogics iteration of BaseSpace Clarity LIMS was a [[laboratory information management system]] (LIMS) for [[genomics]] and [[mass spectrometry]] laboratories. It came in several versions: Gold, "built specifically for the needs of clinical or research, genomics and mass spec laboratories,"<ref name="CLGAbout">{{cite web |url=http://www.genologics.com/claritylims |archiveurl=https://web.archive.org/web/20150922161636/http://www.genologics.com/claritylims |title=Clarity LIMS Gold |publisher=GenoLogics Life Sciences Software Inc |archivedate=22 September 2015 |accessdate=20 August 2020}}</ref> and Silver, "built specifically for the needs of clinical medium-sized to large-sized commercial or core genomics laboratories."<ref name="CLSAbout">{{cite web |url=http://www.genologics.com/clarity-lims-silver |archiveurl=https://web.archive.org/web/20151023004237/http://genologics.com/clarity-lims-silver |title=Clarity LIMS Silver |publisher=GenoLogics Life Sciences Software Inc |archivedate=23 October 2015 |accessdate=20 August 2020}}</ref> Both versions were available for on-premises installation or hosting under the [[software as a service|SaaS]] model.<ref name="CLCloud">{{cite web |url=http://www.genologics.com/features_article/cloud/ |archiveurl=https://web.archive.org/web/20190831204123/http://www.genologics.com/features_article/cloud/ |title=Cloud-based LIMS |publisher=GenoLogics Life Sciences Software Inc |archivedate=31 August 2019 |accessdate=20 August 2020}}</ref>


{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
See [[Vendor:Illumina, Inc.|Illumina, Inc.]] for the current iteration of this LIMS.
|-
  ! colspan="2"| Product: [https://www.genologics.com/clarity-lims/ BaseSpace Clarity LIMS]
|-
  | style="background-color:white; border-style:none;"| {{Databox LIMSfeature
| sample_login_man  = Y<ref name="CLBroch">{{cite web |url=https://www.genologics.com/wp-content/uploads/2016/02/brochure-clarity-lims-2016-web.pdf |format=PDF |title=Clarity LIMS: Intuitive Lab Management |publisher=GenoLogics Life Sciences Software Inc |date=2016 |accessdate=07 January 2019}}</ref>
| sample_track      = Y<ref name="CLBroch" />
| sample_batch      =
| task_event_sched  =
| manual_entry      = Y<ref name="CLBroch" />
| multiple_view      = Y<ref name="CLBroch" />
| data_analysis      = Y<ref name="CLBroch" />
| data_sharing      =
| custom_fields      = Y<ref name="CLBroch" />
| query              = Y<ref name="CLBroch" />
| import_data        =
| data_linking_int  =
| data_linking_ext  =
| eln_support        =
| export_msexcel    =
| export_raw        =
| data_warehouse    =
| deadline_control  =
| production_control =
| project_task_man  = Y<ref name="CLBroch" />
| inventory_man      =
| document_man      = Y<ref name="CLBroch" />
| case_man          =
| workflow_man      = Y<ref name="CLBroch" />
| spec_man          =
| customer_man      =
| billing_man        = Y<ref name="CLBroch" />
 
| reg_compliance    = Y<ref name="CLBroch" />
| qa_qc              =
| performance_eval  =
| audit_trail        =
| chain_custody      =
| roles_security    = Y<ref name="CLBroch" />
| data_norm          =
| data_val          =
| data_encrypt      =
| version_control    =
| data_backup        =
| enviro_monitoring  =
 
| custom_reporting  = Y<ref name="CLBroch" />
| report_printing    =
| label_support      = Y<ref name="CLBroch" />
| barcode_support    = Y<ref name="CLBroch" />
| export_pdf        =
| export_msword      =
| export_htmlxml    =
| fax_integration    =
| email_integration  =
 
| admin_manage      = Y<ref name="CLBroch" />
| modular            =
| instrument_inter  = Y<ref name="CLBroch" />
| mobile_device      =
| alarms_alerts      = Y<ref name="CLBroch" />
| work_timetrack    =
| voice_rec          =
| external_monitor  = Y<ref name="CLBroch" />
| messaging          =
| multilingual      =
| network            = Y<ref name="CLBroch" />
| web_client        = Y<ref name="CLBroch" />
| online_help        =
| saas_model        = Y<ref name="CLCloud" />
| usage_cost        =
| industries        = biotechnology, high-throughput sequencing, life sciences
}}
|-
|}
 
====Pricing====
 
====Demonstration videos and other media====
 
The following demonstration videos are available for Clarity LIMS:
 
* [https://www.youtube.com/watch?v=u2aMJCFuG_4 EPP: GenoLogics Rapid Scripting API]
* [https://www.youtube.com/watch?v=qF2nxwSJvo0 REST: GenoLogics Rapid Scripting API Next Gen LIMS]
* [https://www.youtube.com/watch?v=d_kArhH1RVQ GUI: GenoLogics Rapid Scripting API Next Gen LIMS]
* [https://www.youtube.com/watch?v=Uk4DFdg9prg Clarity LIMS: Intuitive Lab Management Software for Regulated & Research Labs]
* [https://vimeo.com/55484122 Clarity LIMS: Sample Queue & QC]
* [https://vimeo.com/55484121 Clarity LIMS: Configuration]
* [https://vimeo.com/55484120 Clarity LIMS: Preconfigured Workflows & Indices Placement]
* [https://vimeo.com/55484119 Clarity LIMS: Data Entry & Workflow Enforcement]
* [https://www.youtube.com/watch?v=XZpFspaaogg James Hadfield, CIGC, talks about his experiences with Clarity LIMS]
* [https://www.youtube.com/watch?v=PKH-Yma4pww Clarity Run Manager, The cloud-based, easy to use, sample management software for sequencing]
* [https://www.youtube.com/watch?v=aEsEZvJTpqQ Justin Johnson talks about his experience implementing Clarity LIMS at EdgeBio]
* [https://www.youtube.com/watch?v=xv4H1qxKHEE Dr. Warren Kaplan from the Garvan Institute discusses their new HiSeq X Ten powered genome factory]
* [https://www.youtube.com/watch?v=tMN4x6o_WgM Otogenetics' Tim Schwartz discusses their Clarity LIMS implementation]
* [https://www.youtube.com/watch?v=z8OvC7UC7jQ Norwegian Radium Hospital's Clarity LIMS Implementation]
* [https://www.youtube.com/watch?v=KiiB-27oiyQ Dr. Sarah Leigh-Brown discusses CRUK Genomics Core's reasoning for choosing Clarity LIMS]
* [https://www.youtube.com/watch?v=NNGVzFB7FJQ Wellcome Trust Sanger Institute's Clarity LIMS Pilot with Andrew Dearlove]
* [https://www.youtube.com/watch?v=sGyBNn54dAo Implementing Informatics Solutions to Support Genomics, Medical College of Wisconsin (MCW)]
* [https://www.youtube.com/watch?v=Bippc_mIqu8 Clarity LIMS in Medical College of Wisconsin's Clinical Genomics Laboratory]
* [https://www.youtube.com/watch?v=CGFPZseayBk Sanford Health's Dr. Megan Landsverk - What we were looking for in a LIMS]
* [https://www.youtube.com/watch?v=GCPLAonOkJo Clarity LIMS helps Beck's Hybrids' Genomics Lab Reap what they Sow]
* [https://www.youtube.com/watch?v=7I0T1lD6l4Q Baby Genes uses Clarity LIMS to help kids start off on the right foot – Full presentation]
 
The YouTube channel can be [https://www.youtube.com/user/GenoLogics found here].
The Vimeo channel can be [https://vimeo.com/genologics/ found here].
 
====Additional information====
 
* [https://www.genologics.com/wp-content/uploads/2016/02/brochure-clarity-lims-2016-web.pdf Clarity LIMS brochure]


==References==
==References==
<references/>
{{Reflist|colwidth=30em}}


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[[Category:Biotechnology LIMS]]
[[Category:Inactive LIMS vendor]]
[[Category:Cloud-based LIMS]]
[[Category:Inactive vendors]]
[[Category:High-throughput sequencing LIMS]]
[[Category:Life sciences LIMS]]
[[Category:LIMS vendor]]
[[Category:Vendors]]

Latest revision as of 00:38, 12 April 2024

GenoLogics Life Sciences Software
Former type Incorporated
Industry Laboratory informatics
Fate Acquired
Defunct September 9, 2015[1]
Headquarters 4464 Markham St., Suite 2302, Victoria, British Columbia, Canada
Area served Worldwide
Products BaseSpace Clarity LIMS
Employees 60[2]
Parent Illumina, Inc.
Website GenoLogics.com
LinkedIn https://www.linkedin.com/company/55427

GenoLogics Life Sciences Software developed and distributed laboratory informatics software, with a strong focus on the life sciences, especially genomics and proteomics.

History

GenoLogics was founded in 2002 as a privately-held company in Victoria, British Columbia, Canada.[3] One of its first products was Proteus, a laboratory information management system (LIMS) for proteomics; it was beta tested by eight facilities in the fall of 2003 before eventually being released to the market in 2004.[4][5] In October of that year GenoLogics also released its Omix LIMS for systems biology research[6], followed by the June 2006 development announcement of its Geneus LIMS for genomics.[7]

In November 2008, GenoLogics announced it would begin a collaboration with Illumina, Inc. to supply its Geneus software for Illumina's hardware sequencing platform, then called Genome Analyzer.[8] A similar collaboration was agreed upon with Applied Biosystems, Inc. the following year.[9][10]

In July 2011, GenoLogics phased out its Geneus, Omix, and Proteus software in favor of its new GenoLogics LIMS product.[11][12] A few months before this transition, GenoLogics reaffirmed its collaboration with Illumina, stating that it's new GenoLogics LIMS would be incorporated in Illumina's next series of hardware sequencing platforms.[13] The GenoLogics LIMS was rebranded in October 2012 as Clarity LIMS.[14]

In September 2014, GenoLogics again renewed its collaboration with Illumina, this time announcing its Clarity LIMS would be integrated into Illumina's new HiSeq X Ten hardware sequencing platforms. GenoLogics also announced "Illumina will be using GenoLogics’ LIMS to support its collaboration with Genomics England to sequence 100,000 genomes."[15] In February 2015, GenoLogics announced it would be expanding its operations into California citing "increased demand for informatics among labs conducting translational and clinical genomics."[16]

In an August 2015 press release, Illumina announced it had agreed to acquire GenoLogics, which would become part of the Illumina Enterprise Informatics business.[17]

GenoLogics was formally discontinued as a legal entity in Canada on September 9, 2015.[1]

In March or April 2016, "GenoLogics, an Illumina company" changed the name of Clarity LIMS to "BaseSpace Clarity LIMS."[18][19]

Sometime in early 2020, the GenoLogics website was shut down[20], perhaps signaling that the last remnants of the GenoLogics name were disappearing.

Technology and products

BaseSpace Clarity LIMS

The GenoLogics iteration of BaseSpace Clarity LIMS was a laboratory information management system (LIMS) for genomics and mass spectrometry laboratories. It came in several versions: Gold, "built specifically for the needs of clinical or research, genomics and mass spec laboratories,"[21] and Silver, "built specifically for the needs of clinical medium-sized to large-sized commercial or core genomics laboratories."[22] Both versions were available for on-premises installation or hosting under the SaaS model.[23]

See Illumina, Inc. for the current iteration of this LIMS.

References

  1. ↑ 1.0 1.1 "Search for a Federal Corporation". Corporations Canada. Government of Canada. https://www.ic.gc.ca/app/scr/cc/CorporationsCanada/fdrlCrpSrch.html. Retrieved 20 August 2020. "Search for "GenoLogics" or corporation # 419893-0" 
  2. ↑ "Corporate Backgrounder - GenoLogics Life Sciences Software" (PDF). GenoLogics Life Sciences Software Inc. 2012. http://genologics.com/sites/default/files/pdf/genl_7492-corpfactsheet.pdf. Retrieved 09 April 2013. 
  3. ↑ "GLS GenoLogics Corporate Profile" (PDF). GenoLogics Life Sciences Software Inc. 2002. Archived from the original on 04 October 2003. https://web.archive.org/web/20031004070002/http://www.genologics.com/PDFs/GLS%20Corporate%20Profile.pdf. Retrieved 03 April 2015. 
  4. ↑ "Welcome to GenoLogics". GenoLogics Life Sciences Software Inc. 2003. Archived from the original on 07 October 2003. https://web.archive.org/web/20031007091007/http://genologics.com/. Retrieved 03 April 2015. 
  5. ↑ "GenoLogics History". GenoLogics Life Sciences Software Inc. https://www.genologics.com/company/about/history. Retrieved 03 April 2015. 
  6. ↑ "Omix Platform". GenoLogics Life Sciences Software Inc. 2004. Archived from the original on 21 October 2004. https://web.archive.org/web/20041021025112/http://www.genologics.com/products/omixlims/. Retrieved 03 April 2015. 
  7. ↑ "GenoLogics Geneus Introduction - Lab Information and Data Management for Genomics Research". GenoLogics Life Sciences Software Inc. 26 June 2006. Archived from the original on 14 August 2006. https://web.archive.org/web/20060814022716/http://www.genologics.com/products/geneus/index.php. Retrieved 03 April 2015. 
  8. ↑ "Illumina Selects GenoLogics as Next Generation Sequencing Lab & Data Management Partner". GenoLogics Life Sciences Software Inc. 12 November 2008. Archived from the original on 06 January 2009. https://web.archive.org/web/20090106200939/http://www.genologics.com/about-us/press-release/illumina-partner. Retrieved 03 April 2015. 
  9. ↑ "GenoLogics Teams with Applied Biosystems on Lab & Data Management Solution for Next Generation Sequencing". GenoLogics Life Sciences Software Inc. 6 April 2009. https://genologics.com/company/news/genologics-teams-applied-biosystems-lab-data-management-solution-next-generation. Retrieved 03 April 2015. 
  10. ↑ Jones, C. (8 April 2009). "GenoLogics Teams with Applied Biosystems on Lab & Data Management Solution for Next Generation Sequencing". LIMSForum. https://www.limsforum.com/genologics-teams-with-applied-biosystems-on-lab-amp-data-management-solution-for-next-generation-sequencing/51976/. Retrieved 20 August 2020. 
  11. ↑ "GenoLogics". May 2011. Archived from the original on 13 May 2011. https://web.archive.org/web/20110513095055/http://www.genologics.com/. Retrieved 03 April 2015. 
  12. ↑ "Introducing the GenoLogics LIMS". July 2011. Archived from the original on 11 July 2011. https://web.archive.org/web/20110711085004/http://www.genologics.com/genologics-lims. Retrieved 03 April 2015. 
  13. ↑ "GenoLogics Launches LIMS Pre-Configured for Illumina Next-Gen Sequencing Systems and Sample Prep Kits". May 2011. Archived from the original on 11 July 2011. https://web.archive.org/web/20110711085620/http://www.genologics.com/news/genologics-launches-lims-pre-configured-illumina-next-gen-sequencing-systems-and-sample-prep. Retrieved 03 April 2015. 
  14. ↑ "GenoLogics Unveils Clarity LIMS for CLIA-Certified Next Generation Sequencing Labs". 9 October 2012. Archived from the original on 24 August 2014. https://web.archive.org/web/20140824065821/http://genologics.com/press-release-oct-08-2012. Retrieved 20 August 2020. 
  15. ↑ "GenoLogics Enters Agreement with Illumina to Provide Laboratory Information System for HiSeq X Ten System". GenoLogics Life Sciences Software Inc. 4 September 2014. Archived from the original on 18 June 2015. https://web.archive.org/web/20150618004228/http://www.genologics.com/company/news/genologics-enters-agreement-illumina-provide-laboratory-information-system-hiseq-x-ten. Retrieved 20 August 2020. 
  16. ↑ "GenoLogics Announces Expansion". Business Wire. 24 February 2015. http://www.businesswire.com/news/home/20150224005152/en/GenoLogics-Announces-Expansion. Retrieved 03 April 2015. 
  17. ↑ "Illumina Signs Agreement to Acquire GenoLogics, Leader in Genomics Laboratory Information Management System Market". Illumina, Inc. 5 August 2015. https://www.illumina.com/company/news-center/press-releases/press-release-details.html?newsid=2075626. Retrieved 20 October 2015. 
  18. ↑ "Clarity LIMS". GenoLogics Life Sciences Software Inc. Archived from the original on 23 February 2016. https://web.archive.org/web/20160223201443/http://www.genologics.com/clarity-lims/. Retrieved 15 July 2016. 
  19. ↑ "BaseSpace Clarity LIMS". GenoLogics Life Sciences Software Inc. Archived from the original on 12 April 2016. https://web.archive.org/web/20160412164615/http://www.genologics.com/clarity-lims/. Retrieved 15 July 2016. 
  20. ↑ "http://www.genologics.com/". Wayback Machine. Internet Archive. https://web.archive.org/web/*/http://www.genologics.com/. Retrieved 20 August 2020. 
  21. ↑ "Clarity LIMS Gold". GenoLogics Life Sciences Software Inc. Archived from the original on 22 September 2015. https://web.archive.org/web/20150922161636/http://www.genologics.com/claritylims. Retrieved 20 August 2020. 
  22. ↑ "Clarity LIMS Silver". GenoLogics Life Sciences Software Inc. Archived from the original on 23 October 2015. https://web.archive.org/web/20151023004237/http://genologics.com/clarity-lims-silver. Retrieved 20 August 2020. 
  23. ↑ "Cloud-based LIMS". GenoLogics Life Sciences Software Inc. Archived from the original on 31 August 2019. https://web.archive.org/web/20190831204123/http://www.genologics.com/features_article/cloud/. Retrieved 20 August 2020. 
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