Difference between revisions of "ProtLIMS"
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==Product history== | ==Product history== | ||
The Bioinformatics Facility at Fox Chase Cancer Center initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ |title=Proteomics LIMS: A caBIG Project, Year 1 |journal=AMIA Annual Symposium Proceedings 2006 |author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas |pages=1116 |year=2006 |pmc=PMC1839438 |accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web |url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc |title=Software Requirements and Specification Document: caBIG Proteomics LIMS |publisher=[[National Cancer Institute]] |date=February 2006 |page=1 |format=DOC |accessdate=30 January 2013}}</ref> | The Bioinformatics Facility at Fox Chase Cancer Center (FCCC) initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ |title=Proteomics LIMS: A caBIG Project, Year 1 |journal=AMIA Annual Symposium Proceedings 2006 |author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas |pages=1116 |year=2006 |pmc=PMC1839438 |accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web |url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc |title=Software Requirements and Specification Document: caBIG Proteomics LIMS |publisher=[[National Cancer Institute]] |date=February 2006 |page=1 |format=DOC |accessdate=30 January 2013}}</ref> Version 1.0 of the software was released on April 4, 2006, followed by 1.1 on May 19.<ref name="ELN46" /> No further public releases or discussion were made on neither the NCI site or the FCCC site, and the project is assumed to be dead. | ||
==Features== | ==Features== | ||
The main features of protLIMS | The main features of protLIMS can more or less be deduced from [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 the user guide]. The software is described as '''not''' being [[Health Insurance Portability and Accountability Act|HIPAA]] compliant. | ||
==Hardware/software requirements== | ==Hardware/software requirements== | ||
| Line 40: | Line 38: | ||
Installation requirements for protLIMS include: | Installation requirements for protLIMS include: | ||
* | * Java 1.4.2 | ||
* the included JBOSS 4.0.0 | |||
Consult the [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 user documentation] for more information. | |||
==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
* Documentation for protLIMS is located [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 here]. | |||
* Documentation for protLIMS is located [http:// | |||
==Entities using protLIMS== | ==Entities using protLIMS== | ||
Revision as of 00:52, 31 January 2013
| Original author(s) | Joseph Hanauer, Olga Tchuvatkina, and Thomas Moloshok |
|---|---|
| Developer(s) | Fox Chase Cancer Center |
| Initial release | April 4, 2006 (1.0)[1] |
| Discontinued | 1.1 / May 19, 2006 |
| Written in | Java |
| Operating system | Cross-platform |
| Available in | English |
| Type |
Laboratory informatics software Laboratory information management systems |
| License(s) | Unknown |
| Website | gforge.nci.nih.gov |
protLIMS was a free open-source caBIG-compliant laboratory information management system designed for the field of proteomics. Only two public releases of the software were made in 2006, with no updates since.
Product history
The Bioinformatics Facility at Fox Chase Cancer Center (FCCC) initiated development of protLIMS in early-2006 under the National Cancer Institute's Cancer Biomedical Informatics Grid caBIG initiative.[2] The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of proteomics" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."[3] Version 1.0 of the software was released on April 4, 2006, followed by 1.1 on May 19.[1] No further public releases or discussion were made on neither the NCI site or the FCCC site, and the project is assumed to be dead.
Features
The main features of protLIMS can more or less be deduced from the user guide. The software is described as not being HIPAA compliant.
Hardware/software requirements
Installation requirements for protLIMS include:
- Java 1.4.2
- the included JBOSS 4.0.0
Consult the user documentation for more information.
Videos, screenshots, and other media
- Documentation for protLIMS is located here.
Entities using protLIMS
Further reading
- Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas (2006). "Proteomics LIMS: A caBIG Project, Year 1". AMIA Annual Symposium Proceedings 2006: 1116. PMC PMC1839438. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/.
External links
References
- ↑ 1.0 1.1 "protLIMS: Project Filelist". National Cancer Institute. http://gforge.nci.nih.gov/frs/?group_id=98. Retrieved 30 January 2013.
- ↑ Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas (2006). "Proteomics LIMS: A caBIG Project, Year 1". AMIA Annual Symposium Proceedings 2006: 1116. PMC PMC1839438. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/. Retrieved 30 January 2013.
- ↑ "Software Requirements and Specification Document: caBIG Proteomics LIMS" (DOC). National Cancer Institute. February 2006. p. 1. http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc. Retrieved 30 January 2013.
