Main Page

Welcome to LIMSwiki.org, the laboratory, health, and science informatics encyclopedia. Users have contributed: 770 articles. LIMSwiki is a collaborative wiki dedicated to the scientific community, featuring organized, documented, and up-to-date content regarding all aspects of laboratory informatics, bioinformatics, and health informatics. LIMSwiki also strives to maintain relevant knowledge about laboratory equipment as well as commercial and open-source software likely to be used in a laboratory setting. This also includes the vendors of such equipment and software. Like any community wiki, the value and success of LIMSwiki is dependent upon the scientific community contributing their vast knowledge through the creation of relevant articles and editing of existing articles where knowledge is absent. If you wish to enrich the content of this wiki or have something of value to add, please request an account and get started.

Get started Need help getting started with LIMSwiki? Have no fear! Here are some excellent starting points:   LIMSwiki mission LIMSwiki community portal LIMSwiki maintenance portal Request a LIMSwiki account LIMSwiki and MediaWiki help: LIMSwiki help documentation LIMSwiki training guides Wikitext formatting help and examples LIMSwiki naming conventions for article titles MediaWiki user's guide

Featured article of the week "Hierarchical AI enables global interpretation of culture plates in the era of digital microbiology" Full laboratory automation is revolutionizing work habits in an increasing number of clinical microbiology facilities worldwide, generating huge streams of digital images for interpretation. Contextually, deep learning (DL) architectures are leading to paradigm shifts in the way computers can assist with difficult visual interpretation tasks in several domains. At the crossroads of these epochal trends, we present a system able to tackle a core task in clinical microbiology, namely the global interpretation of diagnostic bacterial culture plates, including presumptive pathogen identification. This is achieved by decomposing the problem into a hierarchy of complex subtasks and addressing them with a multi-network architecture we call DeepColony ... (Full article...) Recently featured: Critical analysis of the impact of AI on the patient–physician relationship: A multi-stakeholder qualitative study Judgements of research co-created by generative AI: Experimental evidence Geochemical biodegraded oil classification using a machine learning approach — See more archived featured articles —

Learn more Need to know more about laboratory and other types of informatics? Here is some suggested reading:   Informatics Chromatography data management system Electronic laboratory notebook Laboratory execution system Laboratory information management system Laboratory information system Scientific data management system Compliance topics: All current regulatory articles 21 CFR Part 11 HIPAA NEW - LIMSwiki publications: The Complete Guide to LIMS & Lab Informatics

Key commercial laboratory informatics vendors What does it mean to be "key" for the purpose of this ranking? The criterion for a vendor selling proprietary commercial laboratory informatics software being listed here: the vendor's LIMSwiki page must have a cited (from a publicly-available source) price list. Those with demonstration videos are given higher preference; items ranked by number of videos. Go here for all listed vendors in the wiki. 1. LabLynx, Inc. 2. Two Fold Software Limited 3. BioData Inc. 4. Scilligence Corporation 5. labfolder GmbH 6. LabArchives, LLC 7. Information Management Services, Inc. 8. Research Innovations Limited 9. Biomatters Ltd. 10. eBioSys Pty. Ltd. 11. Thermo Scientific 12. AgileBio 13. Autoscribe Ltd. 14. LABVANTAGE Solutions, Inc. 15. Agilent Technologies, Inc. 16. Instrumentos Científicos SA 17. BiochemLab Solutions 18. NoteBookMaker, LLC 19. Sysment Kft. 20. The Edge Software Consultancy Ltd. 21. LABTrack, LLC 22. Blaze Systems Corporation 23. ChemWare, Inc. 24. CloudLIMS.com, LLC 25. Dynamic Databases, LLC 26. EZQuant Ltd. 27. LabWare, Inc. 28. Laucks Technical Services, LLC 29. Promium, LLC 30. STARLIMS Corporation 31. ChemBytes 32. FORMULATOR Software, LLC 33. Margy Tech Pvt. Ltd. 34. Mountain States Consulting, LLC 35. shazino SAS 36. SLCLAB Informática SL 37. SparkLix Bio IT Corp. 38. SPLhost, Inc. 39. Summit Research Services 40. System Approach, Ltd. 41. TerraSystems

Laboratory informatics software and products Are you looking for LIMS software? An electronic laboratory notebook? Or perhaps laboratory equipment? Try these suggestions: All currently added active lab equipment and software vendors All currently added inactive lab equipment and software vendors CDMS vendors past and present ELN vendors past and present LIMS vendors past and present LIS vendors past and present SDMS vendors past and present Additional tools: Classifications of vendors LIMS vendors by industry LIMS features

Key cloud- or SaaS-based laboratory informatics software Listed below are key commercial and open-source laboratory informatics software offerings listed in the wiki that utilize the cloud or software as a service (SaaS) model. "Key" indicates vendor's (or software's) LIMSwiki page has a cited (from a publicly-available source) price list. Those with demonstration videos are given higher preference; items ranked by number of videos. 1. LabKey Server via LabKey Corporation 2. webLIMS and Health Cloud Hub via LabLynx, Inc. 3. Bika LIMS via Bika Lab Systems (Pty) Ltd. 4. Scilligence ELN via Scilligence Corporation 5. LabArchives via LabArchives, LLC 6. eCAT via Research Innovations Limited 7. labfolder via labfolder GmbH 8. Labguru via BioData Inc. 9. iPad ELN via Cognium Systems SA 10. LABVANTAGE via LABVANTAGE Solutions, Inc. 11. NevisLIMS via Instrumentos Científicos SA 12. NoteBookMaker via NoteBookMaker, LLC 13. Sysment Notebook via Sysment Kft. 14. BioRails DM via The Edge Software Consultancy Ltd. 15. LABTrack via LABTrack, LLC 16. CloudLIMS via CloudLIMS.com, LLC 17. SQUISH via Information Management Services, Inc. 18. iLIS via Margy Tech Pvt. Ltd. 19. Element LIMS via Promium, LLC 20. Docollab via SparkLix Bio IT Corp. 21. Datacloud via SPLhost, Inc. 22. hivebench via shazino SAS

Open-source software Looking for open-source software solutions to make your lab or office more efficient? Try these locations: All open-source software options, by category Open-source ELN software Open-source LIMS software Open-source LIS software Additional LIMSwiki resources We've created several resources for users of the wiki over the years, including: LIMSwiki informatics resource portal LIMSforum and LIMS/LI posts Laboratory, Scientific, and Health Informatics Buyer's Guide NEW: Limspec NEW: LIMS and laboratory informatics questionnaire

Open-source laboratory informatics software Listed below are some of the most active and supported open-source laboratory informatics software projects with articles in the wiki, as of May 2014. Go here for all listed open-source laboratory informatics projects. Bika LIMS via Bika Lab Systems LabKey Server via LabKey Corporation Galaxy via Penn State & Emory University LabTrove via University of Southampton GNomEx via Huntsman Cancer Institute SeqWare via its dev team OSCAR via OSCAR EMR OpenClinica via OpenClinica, LLC eLabFTW via its developer Nicolas CARPi open enventory via Technische Universität Kaiserslautern OpenMRS via its dev team eln via its developer Daniel Wagenaar openCDMS via University of Manchester GNU Health via GNU Solidario openBIS via Center for Information Science and Databases - ETHZ OpenEMR via its dev team MISO via The Genome Analysis Centre OpenELIS via Univ. of Iowa and Univ. of Washington OpenChrom via its dev team Indigo ELN via GGA Software Services, LLC OpenSpecimen via Krishagni Solutions ms-lims via Ghent University and VIB

Additional information Latest news June 1, 2024: It's been a while. How about a few updates? First, today you'll notice a bit of a refresh of the front page. It was becoming increasingly obvious that for a wiki that's been around for well over a decade, finding something across the various namespaces (i.e., areas) still wasn't easy. A plethora of links were pasted across the front page, but that wasn't enough. This front page update is the first of several steps towards making knowledge and information a bit more findable on the wiki (there's always more that can be done). We now have a mini search portal for our four larger non-encyclopedic areas: guides and white papers, Q&A articles, journal articles, and books. This not only highlights these four areas more prominently but also gives users several ways to search and navigate the content in those areas. Second, a difficult decision was made to scale back vendor content. To the point prior about highlighting this wiki's encyclopedic and non-encyclopedic knowledge repository, it was time to move the vendors from the encyclopedic space to their own namespace, the Vendor: namespace. While vendor content is still highly useful to LIMSWiki users, its no longer as front-facing. Additionally, maintaining feature tables for each vendor was increasingly labor-intensive. As such, feature tables were removed, recognizing at the same time the onus remains fully on vendors to be more transparent about making public the full functionality of their offerings so potential buyers can make more informed decisions. Vendor records still retain their history, highlight offerings (i.e., LIMS, LIS, ELN, SDMS, and CDS), industries served, and other original information. Shawn Douglas (talk) 19:06, 1 June 2024 (UTC) November 20, 2023: Are you studying some sort of laboratory-based science in university? How well do your classes address laboratory informatics topics, particularly in the scope of industrial labs and how they operate outside of academia? If you find the discussion lacking, then his guide by industry veteran Joe Liscouski will be worth a look. In his guide A Science Student's Guide to Laboratory Informatics, Liscouski presents "an annotated map of the laboratory portion of a technological world, identifying critical points of interest and how they relate to one another, while making recommendations for the reader to learn more." Hope you find it useful! Shawn Douglas (talk) 18:48, 20 November 2023 (UTC) — Read more archived news — Most popular pages This template is no longer being used on this wiki. — View all current most popular pages —