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[[File:Free and open-source software logo (2009).svg|right]] ...contrast, [[proprietary software]] is under restrictive copyright, and the source code is usually hidden from users.

Approximately one-half of American adults exhibit low health literacy and thus struggle to fi ...nce (CTS) researchers, including an online assessment and follow-up one-on-one interviews.

}}</ref> His study of the distribution of cholera led to the source of the disease, a contaminated water pump (the Broad Street Pump, whose han ...printing plates for each colour. While the use of layers much later became one of the main typical features of a contemporary GIS, the photographic proces

...from the use of a laboratory information system.]]An '''LIS feature''' is one or more pieces of functionality that appear within a [[laboratory informati ...|multilingual support]] allows users to interact with the LIS in more than one language. Some functionality may also overlap several research phases, maki

...itional operational functionality in the process.]]An '''ELN feature''' is one or more pieces of functionality that appear within an [[electronic laborato ...|multilingual support]] allows users to interact with the ELN in more than one language. Some functionality may also overlap several research phases, maki

A '''LIMS feature''' is one or more pieces of functionality that appear within a [[laboratory informati ...ormática's]] ALFA21, allowing users to interact with the LIMS in more than one language. Some functionality may also overlap several laboratory phases, ma

...re applications|Generalized procedure for screening free software and open-source software applications]]"''' .... ('''[[Journal:Generalized procedure for screening free software and open-source software applications|Full article...]]''')<br />

Arguably one of the first "bioinformatics" projects—though the concept didn't yet exis ...ch studies are often used to determine the genes implicated in a disorder: one might compare microarray data from cancerous epithelial cells to data from

...ce electronic lab notebook for chemists in academia|Chemotion ELN: An open-source electronic lab notebook for chemists in academia]]"''' ...of chemical reactions and mechanisms. ('''[[Journal:Chemotion ELN: An open-source electronic lab notebook for chemists in academia|Full article...]]''')<br /

...derstand what a LIMS is, what the alternatives are, what and why acquiring one looks like, and what needs to be considered in putting together a competent ...d beverage laboratories have been released, again each article focusing on one primary question related to the industry. In a corresponding move, nearly 3

One of the main topics within [[research]] activities is the [[Information mana [[Clinical laboratory|Clinical diagnostic laboratories]] produce one product—[[information]]—and for this to be valuable, the information mu

...-introducing-joomla-10.html |title=Introducing Joomla! 1.0 |publisher=Open Source Matters, Inc |date=15 September 2005 |accessdate=3 April 2012}}</ref> ...ml |title=New Features in Joomla! 2.5 |author=Tarr, Andrea |publisher=Open Source Matters, Inc |date=28 December 2011 |accessdate=3 April 2012}}</ref>, and i

...ll: A case of data integration and querying in a distributed LIMS platform|One tool to find them all: A case of data integration and querying in a distrib ...y integrate heterogeneous data stored in multiple databases. ('''[[Journal:One tool to find them all: A case of data integration and querying in a distrib

...'' (HIB), and human papillomavirus. The funding of NIH has at times been a source of contention in Congress, serving as a proxy for the political currents of ...running applications that handle the core business and operational data of one or more organizations. Often those applications will be composed of multipl

...and [[information]] between health care organizations are recognized as a source of "big data" in health care and have the potential to provide public healt ...on how well its features solve the specific needs of the end application. One key feature that we see as a need for future IoT networks is the ability to

...t commercially available, is considered a hazardous reactive, and requires one-day synthesis by specialized chemical staff, the process of silylation was ...focuses on advancement and maturity by bringing together several NASA open-source, big data projects for parallel analytics, anomaly detection, ''in situ''-t

| name = OpenX Source | title = '''OpenX Source'''

...ch data infrastructure to other disciplines is possible in the future. The source code of the project is publicly available under a permissive Apache 2.0 lic ...so doing so in a way that leverages machine support for better efficiency. One primary need yet to be addressed is that of findability, and achieving bett

...postulating on the idea of an electronic notebook, and by 1994 he provided one of the first working examples of an ELN.<ref name="BormanELNRev">{{cite jou ...collection of Lotus Notes databases and applications," making it arguably one of the first enterprise ELN solutions in use at the time.<ref name="McLaugh

...web/20100315154916/http://projectpophealth.org/ |title=popHealth - An Open Source Population Health Reporting Prototype |publisher=The MITRE Corporation |arc '''popHealth''' is free open-source healthcare reporting software, described as such:

...03684 |accessdate=17 September 2014}}</ref> for the purposes of completing one or more computational tasks that would otherwise require significantly more One of the main strategies of grid computing is to use middleware to divide and

'''LabKey Server''' is a free, open-source [[laboratory informatics]] solution released under an Apache license. LabKe ...tthew Bellew, and Adam Rauch — to begin development on the core of an open-source application that would later be called the Computational Portal and Analysi

...stands not as an open-source software but "an approach to building an open-source electronic lab notebook (ELN) or research platform that is SAFE (Sustainabl ...ebsite mylabbook.org as a public exploration of "modular and flexible open-source ELN based on Drupal."<ref name="MLB_AboutArch11">{{cite web |url=http://www

...method for website authors to request notification when somebody links to one of their documents, a feature that would be adopted by a number of other bl ...ism from some users of the software, with some moving to the then-new open-source blogging tool [[WordPress]].<ref name="NC1" /><ref name="NW1" /> With the r

...n irrigation water can lead to contaminated food products. In the case of one outbreak of E. coli in Europe, the ultimate culprit appeared to be the prov In the case of either soil or feed, and to a much lesser extent water (unless one is discussing sludge as fertilizer), complexity of the matrix, and the pote

...ary''' is free open-source reporting engine able to use data from any data source. ...t like the one I have described on Sourceforge.net, and I adopted the open-source strategy that says you have to 'release early, release often.' The feedback

...ource_ecommerce_solution/ |title=PrestaShop Releases v1.0 of its Free Open-Source eCommerce Solution |author=Wilson, Peter |publisher=PrestaShop, Inc |date=0 '''PrestaShop''' is a free open-source eCommerce and content management application most often used to create and

...the actual glass products are produced. There are several processes used, one being glass blowing (generally machine based, although some specialty glass For one particular type of glass, additional tests are required beyond straight phy

...r systematic reviews are less optimistic about the effects of a CDDS, with one from 2011 stating "[t]here is a large gap between the postulated and empiri ...stems, widespread adoption and acceptance has still not yet been achieved. One large roadblock to acceptance has historically been workflow integration. A

...rl=http://www.catissueplus.org/feature/free-open-source |title=Free & Open Source |publisher=Krishagni Solutions Pvt. Ltd |accessdate=17 October 2014}}</ref> '''OpenSpecimen''' is a free and open source [[biobank|biobanking]] informatics platform that is used in 20+ biobanks in

...documents and custom vector graphics. It has been available in a free open-source version since 2000; however, the company also offers a commercial version o ...nuary 2000. However, plans for ReportLab evolved before that, with an open-source project starting on Sourceforge in December 1999.<ref name="RLSourceF">{{ci

'''OpenERP''' was a web-based open-source enterprise resource planning (ERP) application. The software was offered in ...s studies in 2005 he introduced a partner network and evangelized the open source nature of TinyERP.<ref name="OERPInt">{{cite web |url=http://www.profoss.eu

...leases/openx-sells-open-source-ad-serving-product/ |title=OpenX Sells Open Source Ad Serving Product |publisher=OpenX Technologies |date=13 September 2013 |a ...e's original developers, and others acquired the rights to the legacy open-source code base of OpenX on September 13, 2013<ref name="OXSourceSold" /> and rel

...cite web |url=https://www.kickstarter.com/projects/2039813795/scinote-open-source-scientific-notebook/posts/1489098 |title=sciNote is launched! |author=sciNo ...s you manage your laboratory work and stores all your experimental data in one place."<ref name="sNGH">{{cite web |url=https://github.com/biosistemika/sci

'''OpenEpi''' is a free open-source epidemiological statistics toolset. The tools are all web-based, programmed ...listed numerous individuals to provide volunteer contributions to the open-source project. On January 1, 2004, the team announced the beta tag assigned to th

..., overseer Federal Health Architecture (FHA) made the decision to open the source code of the CONNECT software to the public and develop infrastructure for t ...ne driven by the FHA and ONC to transition development to one of full open source community engagement.<ref name="Pulse1">{{cite journal |url=http://www.conn

'''PostgreSQL''', often simply '''Postgres''', is a free open-source object-relational database management system, developed by the PostgreSQL G ...Jolly Chen replaced the Ingres-based QUEL query language interpreter with one for the SQL query language, creating Postgres95. The code was released on t

'''OpenEMR''' is free open-source [[electronic health record]] and medical practice management software that ...March 5, 2005, version 2.7.0 was released, and with it came a shift of the source code to SourceForge.<ref name="OEMRFCReleases1" /><ref name="OEMRReleasesEa

...me">{{cite web |url=http://www.knime.org/ |title=KNIME - Professional Open-Source Software |publisher=KNIME.com AG |accessdate=27 May 2014}}</ref> ...On July 28, 2006, a version 1.0.0 was released to the public as free open-source software.<ref name="KNINewsArch08" />

...1f10d |title=New version of "Bugzilla" (the mozilla.org bugsystem) -- with source! |publisher=netscape.public.mozilla.announce |date=26 August 1998 |accessda ...organizations for use as a [[bug tracking system]] for both free and open source software and proprietary projects and products.

...per [[quality management system]] (QMS) in the [[clinical laboratory]]. As one of the most popular QMS tools for process improvement, Six Sigma techniques ...nd is more likely to be hesitant in sharing the traceability details among one another owing to a lack of trust, which can be overcome by using blockchain

...e parc informatique''' (Free Management of Computer Equipment), is an open-source network and asset management application that anyone can use to manage and ...ork was going to be done on the project. Despite the news, Lebeau took the source code for IRMA and modified it to fit the needs of his employer, implementin

...rth |title=WebReach, Inc. Unveils Mirth – Healthcare Industry’s First Open Source HL7 Messaging Middleware |publisher=Mirth Corporation |date=18 July 2006 |a ...health care integration engine that "translates message standards into the one your system understands,"<ref name="MCFAQ1">{{cite web |url=https://www.nex

'''Compiere''' or '''Compiere ERP''' is an open-source enterprise resource planning (ERP) application. Developer Consona Corporati ...na Corporation |accessdate=14 December 2012}}</ref> The duo chose the open-source model for Compiere because, they claimed, it allows "people [to] do the pre

'''NextReports''' was a free open-source report design and publishing platform. It was composed of three separate el ...e.com/articles/nextreports-becomes-open |title=NextReports becomes an Open Source Project! |author=Dinca, M. |work=DZone |date=09 October 2013 |accessdate=27

...se Subversion to maintain current and historical versions of files such as source code, web pages, and documentation. Its goal is to be a mostly-compatible s ...and MediaWiki. Google Code also provides Subversion hosting for their open source projects.

...typically provided by a third-party and does not need to be purchased for one-time or infrequent intensive computing tasks. Pricing on a utility computin ...uter networks, were using as little as 10 percent of their capacity at any one time, just to leave room for occasional spikes. Having found the new cloud

...changlog">{{cite web |url=http://api.drupal.org/api/drupal/CHANGELOG.txt/7/source |title=CHANGELOG.txt - Drupal 7 |publisher=Dries Buytaert |accessdate=30 Ma '''Drupal''' is a free open-source content management system (CMS) and content management framework (CMF), use

...ment system (GeoCMS) or groupware web application. Tiki features an all-in-one design, as opposed to a core+extensions model followed by other CMSs. This ...open-source-software-the-year-115 |title=Bossie Awards 2010: The best open source software of the year |author=Wayner, Peter |publisher=InfoWorld |date=25 Au

...0)<ref name="PMStart">{{cite web |url=http://www.processmakerblog.com/open-source/official-launch-processmaker-oss-version-10/ |title=Official Launch: OSS Ve '''ProcessMaker''' is free open-source business process management (BPM) and workflow management software focused

'''todoyu''' was free open-source web-based project and time management software. Along with the free version ...tikel/75-000-Euro-fuer-Open-Source-221687.html |title=75.000 Euro für Open Source |publisher=heise online |date=29 January 2009 |accessdate=27 December 2012}

| license = [http://eln.sourceforge.net/license.html Open Source License] ...oratory |date=31 October 2007 |accessdate=30 January 2013}}</ref> The open-source software can still be found on SourceForge, the latest client version 5.2.2

'''Booked''' is a free open-source web application designed to improve scheduling and manage resource utilizat ...sdate=02 November 2012}}</ref>, and by September 13, 2004 an official open-source version 1.0 release of the software was made on Freecode.<ref name="pSIStar

...r ''modular object-oriented dynamic learning environment'') is a free open-source e-learning software platform, also known as a course management system, lea * the Moodle Community, an open network of over one million registered users who interact through the Moodle community website

...25 June 2008 |accessdate=5 April 2012}}</ref> Its syntax is similar to the one used by [[MediaWiki]]. Releases were limited in 2010 and 2011, with only one each year; however, both were considered to be major releases with several

...accessdate=29 September 2012}}</ref> The program can be accessed either by one of several public servers or via an installation of a personal web instance ...sconnect' between computer science development tools and algorithms on the one hand, and the researchers wanting to use them on the other."<ref name="Gala

'''ADempiere''' or '''ADempiere ERP''' is a free open-source enterprise resource planning (ERP) application. ...nity and its corporate sponsor concerning the greater emphasis on the open source nature of the project rather than the community nature of the project.<ref

'''Phraseanet''' is free open-source digital asset management software. French developer Alchemy also offers a h ...the software under an open-source license, offering its first stable open-source release version 3.0.0 on March 16, 2010 at the Linux Solutions Exhibition i

'''BIRT''' is a free open-source "technology platform to create data visualizations and reports that can be ...dation — an independent non-profit corporation stewarding the Eclipse open-source software community — on August 24, 2004, proposing and sponsoring the dev

'''CUBRID''' is free open-source relational database management system (RDBMS) optimized for web application ...vember 18, 2008, after two years of development, the project was made open-source on NAVER Corporation's (parent of NHN) developer site.<ref name="CUBNaver">

'''Encapsulation''' is one of the four fundamentals of object-oriented programming (OOP), involving th In programming languages, "encapsulation" is used to refer to one of two related but distinct notions (and sometimes to both)<ref name="Scott

'''LabTrove''' is a free open-source [[electronic laboratory notebook]] (ELN) that "enables researchers to share An open-source SourceForge project was started on July 28, 2010<ref name="LTSF">{{cite web

'''Pentaho Reporting''' is a free open-source report design and publishing platform "that generates reports from data str ...eJFAcq">{{cite web |url=http://www.b-eye-network.com/view/2262 |title=Open Source Leader Pentaho Adds JFreeReport Project |publisher=BeyeNETWORK |date=17 Jan

...'' (previously known as '''SpagoBI''' prior to 6.0 release) is a free open-source business intelligence suite that includes reporting tools, as well as data On February 21, 2005, a SourceForge project was started for the open-source software SpagoBI.<ref name="SBISForge">{{cite web |url=http://sourceforge.n

'''ClinViro''' is an open-source [[laboratory information management system]] (LIMS) for HIV genotypic resis ...and managing the research data around those efforts. One of the first open-source HIVDB applications to be published on GitHub was the virus data and analysi

...= [http://theelggfoundation.org/ The Elgg Foundation] and the open source community ...t/projects/dekiwiki/files/MindTouch%20Core%20Source/ |title=MindTouch Core Source |publisher=SourceForge |accessdate=23 March 2012}}</ref>

...change (PBX). Like any PBX, it allows attached telephones to make calls to one another and to connect to other telephone services including the public swi ...te web |url=http://www.asteriskwin32.com/ |title=Asterisk Win32 - The Open Source PBX for Windows |publisher=asteriskwin32.com |accessdate=4 April 2012}}</re

..., web-based graphing tool designed as a front-end application for the open-source, industry-standard data logging tool [[RRDtool]]. Cacti allows a user to po ...012 |accessdate=16 March 2012}}</ref> Cacti can be extended to monitor any source via shell scripts and executables.<ref>{{cite web |url=http://www.cacti.net

...versions (CloverETL Designer, Server, and Cluster) as well as a free open-source Community edition. ...013}}</ref>) The software was soon simply called "CloverETL," with an open-source project starting on BerliOS Developer on January 5, 2003<ref name="CETLBerl

...language, structure, and data types required for seamless integration from one system to another.<ref name="KimCreating05">{{cite web |url=http://www.kath * leverage open source development principles;

The U.S. National Science Foundation-funded NESCent has been one of the key groups responsible for advancing the application of informatics ...iple taxa with data describing present and past environments and climate"; one such success has been GeoPhyloBuilder.

...|accessdate=17 April 2024}}</ref> Given that antibiotic resistance remains one of the primary challenges for global public health, determinations of how s .... |last4=Wright |first4=Mason D. |date=2023-01-19 |title=Flexible and open-source programs for quantitative image analysis in microbial ecology |url=https://

...of a lab information management system for translational medicine |journal=Source Code for Biology and Medicine |author=Bath, Timothy G.; Selcuk Bozdag; Vack ...formatics]] system for their research facility, so they decided to develop one to meet their requirements. Their goal was stated as wanting to<ref name="B

...for "free and open-source," emphasizing the developers' commitment to open-source software. ...<ref name="FWNews" /> However, the release cycle slowed in 2012, with only one release (1.1.5) occurring as of November 2012.

'''PHPOffice''' is a collection of free open-source PHP libraries for reading and writing files from a wide variety of document ...Ex100" /> Of the tree PHPOffice projects, PHPExcel remains the most active one as of January 2013, with a stable release of 1.7.8 arriving in October 2012

...ics software designed to manage sample inventories. However, only one open-source release of the software was made in 2005, with no updates since. ...or Biomedical Research (SFBR) under several grants, to be released as open-source software.<ref name="SIPHome">{{cite web |url=http://www.enfoldsystems.com/s

...of data between two disparate sources), typically in images acquired from one or more [[Imaging informatics#Diagnostic imaging modalities|imaging modalit ...three-year contract to the Insight Software Consortium to develop an open-source registration and segmentation toolkit for [[Medical imaging|imaging]] data.

...edate=14 February 2014 |accessdate=05 January 2015}}</ref>) is a free open-source web application framework/"stream server"<ref name="pumpHome">{{cite web |u ...r site Identi.ca which used the technology "was quickly branded as an open source 'Twitter replacement' ... [which] hampered StatusNet's adoption as a federa

'''JuliaBase''' is a free open-source [[laboratory informatics]] application designed to be "a database solution ...d-as-open-source |title=Lab Samples Database "JuliaBase" Published As Open Source |author=Bronger, Torsten |work=Slashdot |publisher=SlashdotMedia |date=01 F

...''NCI''') is part of the [[National Institutes of Health]] (NIH), which is one of 11 operating divisions that are part of the [[United States Department o The caBIG Clinical Trials Suite is an open-source NCI-sponsored enterprise clinical trials software system that is compliant

'''MoinMoin''' is a free open-source wiki engine implemented in Python, initially based on the PikiPiki wiki eng ...12}}</ref><ref>{{cite web |url=http://www.itwire.com/business-it-news/open-source/15560-google-competition-targets-teens |title=Google competition targets te

'''Diaspora''' or '''DIASPORA*''' is free open-source social media networking software which implements a distributed social netw ...stponed due to the need to add new design features as well as the death of one of its founders, Ilya Zhitomirskiy.<ref name="DiaBW10May12">{{cite web |url

'''XOOPS''' is free open-source content management software. "XOOPS" stands for eXtensible Object Oriented ...yPHPNuke 1.8.5, and the team claimed to have created one of the first open-source applications based on object-oriented programming.<ref name="XOO07Report" /

One approach to reducing the costs and promoting wider use is to develop open s Prescribing errors are the largest identified source of preventable errors in hospitals. A 2006 report by the Institute of Medic

...data]]" to generate "itself out of notes and files, which are generated by one or several experiments." The developers state that it is suitable for "indi [[Category:Electronic laboratory notebooks (open source)]]

'''MediaWiki''' is a free open-source wiki software application developed by the Wikimedia Foundation and others. ...edia Foundation, Inc |accessdate=3 April 2012}}</ref> Because Wikipedia is one of the world's largest websites, achieving scalability through multiple lay

'''Nagios''' (referred to as '''Nagios Core''' officially) is a popular open-source web-based [[network monitoring]] and asset management software application. ...of 1999<ref name="NagiosStart" />, thinking "there might be approximately one dozen other people who might be interested in the application."<ref name="N

...2/13/rails-1-0-party-like-its-one-oh-oh/ |title=Rails 1.0: Party like it's one oh oh! |author=Hansson, David Heinemeier |publisher=RubyOnRails.org |date=1 '''Ruby on Rails''', often shortened to '''Rails''' or '''RoR''', is an open-source full-stack web application framework for the Ruby programming language. Rub

'''DSpace''' is a free open-source software package that provides the tools for management of digital assets, ...g-term governance of the project outside of HP and MIT was discussed, with one of the first steps being to transfer mailing lists and other DSpace Federat

'''ClearHealth''' was open-source practice management, [[electronic medical record]], and medical billing sof ..., moving to ClearHealth as its CEO in 2003. Version 1.0, release candidate one was released on May 16, 2005 at the 2005 TEPR (Towards an Electronic Patien

'''Gallery''' is a free open-source application allowing users to manage and publish digital photographs and ot ...m on their own website.<ref>{{cite web |url=http://www.datamation.com/open-source/The-SourceForge-Story-3705731-2.htm |title=The SourceForge Story: Page 2 |a

At the state level, public health laboratories are typically organized in one of three ways: within a state health department, within or affiliated with ...Category:Public health software (open source)|Public health software (open source)]]

'''leihs''' is a free web-based open-source resource scheduling and management solution developed by the Zurich Univers ...ith a German-only user interface.<ref name="LeihsFirst" /> Ramon Cahenzli, one of the lead developers, began a pan-university approach to development of l

...Database from ANSI, AAMI, ASTM International, and DIN Provides Centralized Source of Information for Medical Device Professionals |publisher=PR Newswire |dat ...an 50 percent of every committee or subcommittee, and votes are limited to one per producer company. Because of these restrictions, a substantial waiting-

...providers' and payers' operational processes (which may, however, serve as source or feeder systems for the CPR). The CPR completely replaces the paper medic ...e definition of an EHR system limits its scope to the continuum of care in one [health care delivery organization].<ref name="EHRDefGart">{{cite web |url=

...tion systems to represent a molecule and to communicate its structure from one place to another using short ASCII strings. SMILES strings can be imported ...n open standard called "OpenSMILES" was developed by the Blue Obelisk open-source chemistry community.<ref name="OSBO">{{cite web |url=http://www.opensmiles.

...per U.S. county. Collecting such data and clearly representing it is just one of the various challenges facing infectious disease informaticians.]] ...a mining tools, and biostatistical applications.<ref name="ChenMI" /> Open-source software projects such as Framework for Reconstructing Epidemiological Dyna

...61265474 |accessdate=19 March 2020}}</ref> Klausner saw clinical trials as one of the key components of cancer research. Given their value to researchers, ...gement, creating a software sharing hub, and releasing code under the open-source model.

...customer to simplify "your toolset to collect system-level metrics all in one place," including the ability to "view graphs, track performance, and set u

The funding of NIH has at times been a source of contention in Congress, serving as a proxy for the political currents of In February 2009, President Barak Obama gave the NIH a one-time 34 percent budget increase of $10.4 billion under the American Recover

..."Economic Model Building and Computers in Forestry Research," representing one of the first known efforts to examine the role of computers and informatics Open-source software solutions have also become more accepted, as is seen in the expans

...te meaningfully and responsibly to the decision-making process. Therefore, one of the aims of hydroinformatics is a completely transparent decision making ...Development and Management Unit |accessdate=21 March 2020}}</ref> and open-source software like HYPE (HYdrological Predictions for the Environment)<ref name=