Search results

...shocks and stressors. How can we tackle the “wicked problems” embedded in a food system? More specifically, how can convergent research programs be des ...defines food systems [[Informatics (academic field)|informatics]] (FSI) as a tool to enhance equity, sustainability, and resilience of food systems thro

...ts we demonstrate the application of our framework to design and implement a standard format for electrophysiology data and show how data standardizatio ...t can represent neuroscience data and make the data easily accessible play a key role in enabling scientific discovery, development of reusable tools fo

...guide also includes a handy Microsoft Excel workbook that will help act as a "cheat sheet" for persuading stakeholders to better buy into your vision of ...es helpful information about food and beverage LIMS acquisition, including a LIMS requirements specification and information on how to best put it to us

...lenses that emphasize interpretation and practice in the implementation of new digital technologies in organizations. ...clude enhancement of the quality of internal communications and workflows. A central practice related to the successful use of ESMPs is active engagemen

...nd share protocols, connect with fellow community members, and learn about new and innovative research in the field. The web-based software for developing ...="KwakWhatIs10">{{cite journal |title=What is Twitter, a social network or a news media? |journal=Proceedings of the 19th International Conference on Wo

...mproving collaboration and reproduction in psychological research by using a notebook system ...findings is so difficult. With the introduction of [[Jupyter Notebook]], a new tool for the organization of both static and dynamic [[information]] became

...hanks to the use of advanced tools, this facility has been able to analyze a growing number of stations and data in real time, which greatly benefits ne ...nutrients for oceans, and affect human health. Aerosols generally produce a cooling effect, although an aerosol can also locally warm up the atmosphere

|title_full = ROBOT: A Tool for Automating Ontology Workflows ...; Douglass, Eric; Harris, Nomi L.; Mungall, Christopher J.; Overton, James A.

...systems second,” it reverses that order, recommending the construction of a solid support structure before populating the lab with systems and processe ...arious systems. Those working in existing labs will also benefit by seeing a different perspective than they may be used to, giving them an alternative

...enhanced security, horizontal and vertical scalability, high availability, a thriving technology partner ecosystem, and much more. Despite these advanta ...Proteomics |author=Muth, T.; Peters, J.; Blackburn, J. et al. |volume=88 |page=104–8 |year=2013 |doi=10.1016/j.jprot.2012.12.026 |pmid=23305951}}</ref>

|title_full = A web application to support the coordination of reflexive, interpretative to ...information system]]s (LISs). In this work, we describe the development of a web application that improves the efficiency of pathologists and [[laborato

...t is possible to download, install, and use bioinformatics tools with just a few clicks. ...}}</ref> Using Windows Subsystem for Linux (WSL) is often possible in such a scenario: it is provided as an app from the Microsoft Store.

...f-new-active-websites-in-the-us/ |title=WordPress Now Powers 22 Percent Of New Active Websites In The U.S. |author=Rao, Leena |date=19 August 2011 |publis ...rst released on May 27, 2003, by Matt Mullenweg<ref name="WPRelease" /> as a fork of b2/cafelog. As of the end of March 2012, version 3.3 had been downl

...mensional datasets from different sources and scientific approaches. After a brief summary of the reasons for the interest in data science and AI within ...t6=Giuseppe |last7=Moshelion |first7=Menachem |last8=Tuskan |first8=Gerald A. |last9=Keurentjes |first9=Joost J.B. |last10=Altman |first10=Arie |date=20

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] Cancer immunotherapy has recently entered a remarkable renaissance phase with the approval of several agents for treatm

...e user with respect to the current task and (3) interactively presented in a unique working environment to be explored. ...tween the different tools and their associated environments. Consequently, a significant amount of time is dedicated to the transformation of data to ac

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] ...h literacy and health information technology adoption: The potential for a new digital divide]]"'''

|title_full = Building a newborn screening information management system from theory to practice ...ement. In undertaking a holistic full product lifecycle redesign approach, a number of change management challenges were faced by NSO across the entire

...he features their products offer — on the [[:Vendor:ELN vendor|ELN vendor page]]. ...of an ELN will also change. Yet like the dishwasher, the ELN tends to have a base set of functionality that defines it.

|title_full = Custom software development for use in a clinical laboratory .... Many of the risks associated with custom development can be mitigated by a well-structured development process, use of open-source tools, and embracin

...using in-network caching of popular datasets, and allows the community to create infrastructure that supports operations such as creating federation of cont ...on shows a sixfold speed up in data insertion into the workflow. Third, as a pilot, we have used an NDN naming scheme (agreed upon by the community and

...e_full = Design and refinement of a data quality assessment workflow for a large pediatric research network ...tating communication with data teams. This study presents the evolution of a systematic workflow for data quality assessment in CDRNs.

...y appeared in Liscouski's ''Computerized Systems in the Modern Laboratory: A Practical Guide'' as Chapter 3 - Laboratory Informatics / Departmental Syst ...we get into the details of what these technologies are, we must establish a framework for understanding laboratory operations so that we can see where

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] ...emistry researchers to build their own databases of digital information as a prerequisite for the detailed, systematic investigation and evaluation of c

|title_full = Chemozart: A web-based 3D molecular structure editor and visualizer platform ...e. Both client-side and server-side application are written in JavaScript. A combination of JavaScript and HTML is used to draw three-dimensional struct

...from any accredited computer. The interface provided by SistematX contains a wealth of useful information for the scientific community about natural pro ...Diversity, and Design |author=Blunt, J.W.; Munro, M.H.G. |editor=Osbourn, A.; Goss, R.J.; Carter, G.T. |publisher=John Wiley & Sons, Inc |year=2014 |pa

...our extensive research and user study results, proposing an ELN built upon a pre-existing cloud notebook platform that makes use of accessible popular s ...ience and Technology for Humanity (TIC-STH) |author=Coppin, P.; Hockema, S.A. |volume=2009 |year=2009 |pages=801–07 |doi=10.1109/TIC-STH.2009.5444390}

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] The paper discusses different approaches to building a [[clinical decision support system]] based on big data. The authors sought

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] ...re data access is controlled by access committees. Access is determined by a formal application procedure for the purpose of secure storage and distribu

...rough their implementation in our work, we demonstrate how using GitHub as a central platform can aid the real-time sharing of knowledge and collaborati ...move beyond the primitive utility of the paper [[laboratory notebook]] as a record-keeping tool. In 1994, Borman noted that [[electronic laboratory not

..., the features their products offer—on the [[:Vendor:LIS vendor|LIS vendor page]]. ...''LIS feature''' is one or more pieces of functionality that appear within a [[laboratory information system]] (LIS).

...for a postgraduate certificate (PG Cert) in clinical bioinformatics, with a more technical audience. ...ware, all of which requires support, which is more difficult to provide at a distance. This can be further complicated when students use managed equipme

|title_full = Electronic laboratory notebooks in a public–private partnership |authors = Vaas​, Lea A.I.; Witt​, Gesa; Windshügel, Björn; Bosin, Andrea; Serra, Giovanni; Bru

...graphical information system''', or '''geospatial information system''' is a system designed to capture, store, manipulate, analyze, manage, and present ...or purpose. What goes beyond a GIS is a spatial data infrastructure (SDI), a concept that has no such restrictive boundaries.

...a request for information (RFI). The idea is to allow users to incorporate a standardized specifications sheet in their comparison of various LIS produc This questionnaire lists the extensive requirements of an LIS. (For a [[laboratory information management system]] (LIMS, see the [[LII:LIMS and

|title_full = ApE, A Plasmid Editor: A freely available DNA manipulation and visualization program ...ion-ligation assembly, and Golden Gate assembly. In addition, ApE provides a platform for creating visually appealing linear and circular plasmid maps.

...h is provided as a hands-on tool for mouse research facilities looking for a LIMS. ...er follows an empiric approach by trying to derive general principles from a limited selection of LIMS descriptions, provided by seven large-scale mouse

...S.; Levy, Leslie-Anne; Evans, Nate J.; Fowler, Jennifer M.; Dickey, Ellen A. ...biosecurity business processes can help public and private sector partners create an assessment framework to identify mitigation options for consideration th

...mina will increase the number of laboratories hosting a sequencer. In such a context, it is important to provide these teams with an easily manageable e ...ding, running and monitoring system. The analyses can be run locally or in a cluster environment using Sun Grid Engine.

|authors = Berger, Kavita M.; Schneck, Phyllis A. ...data]]; and (2) the use of engineering approaches to manipulate or create new biological organisms that have specific functions, such as production of in

...1]] - 2022 - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] ...the structure and process of the development of an integrated platform at a midlevel Appalachian academic medical center, along with its initial uses .

|title_full = Development of a core competency framework for clinical informatics ...itial systematic literature review of existing skills and competencies and a job listing analysis.

...tructure to solve healthcare big data storage and archiving problems using a distributed file system ...han 97% from a Not Only Structured Query Language (NoSQL) system, 80% from a relational database management system (RDBMS), and 74% from an operating sy

|title_full = Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology labo ...omain. Here, we describe an iterative, human-centered approach to creating a report template for communicating tuberculosis (TB) genomic test results.

...022|2022]] - [[Main Page/Featured article of the week/2023|2023]] - [[Main Page/Featured article of the week/2024|2024]] '''"[[Journal:Towards a risk catalog for data management plans|Towards a risk catalog for data management plans]]"'''

|title_full = A metadata-driven approach to data repository design ...o examples of data preview are illustrated, including the demonstration of a method for integration with commercial software that confers rich domain-sp

...t, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan ...= Email: http://www.nature.com/articles/srep04278/email/correspondent/c1/new (Requires login)

...the features their products offer—on the [[:Vendor:LIMS vendor|LIMS vendor page]]. ...'LIMS feature''' is one or more pieces of functionality that appear within a [[laboratory information management system]] (LIMS).

|title_full = From months to minutes: Creating Hyperion, a novel data management system expediting data insights for oncology research ...team of individuals with both technical and clinical expertise to develop a custom [[Information management|data management]] software platform—Hyper

|title_full = A systematic framework for data management and integration in a continuous pharmaceutical manufacturing processing line ...eventually exported from this system to cloud storage, which could provide a reliable and consistent data source for data visualization, data analysis,

...- An Introduction |editor=Hovenga, E.J.S. |publisher=IOS Press |year=2010 |page=9–15 |isbn=1607500922}}</ref> Health informatics is applied to the areas ...|editor=Griffiths, P. |publisher=Academic Conferences Limited |year=2006 |page=127–138 |isbn=1905305362}}</ref>

....; Boix-Chova, N.; Gómez-Cabrero, D.; Tegner, J.; Abugessaisa, I.; Conesa, A. ...search laboratories with a freely-available, integrated system that offers a simple and effective way for experiment annotation and tracking of analysis

...Chambers, Megan I.; Beyramysoltan, Samira; Garosi, Benedetta; Musah, Rabi A. |affiliations = State University of New York

|title_full = A data quality strategy to enable FAIR, programmatic access across large,<br ...ntly provides processes for: (1) consistency of data structures needed for a high-performance data (HPD) platform; (2) [[quality control]] (QC) through

...sion systems, universal identifiers for individual patients and end users, a reference standard infrastructure to support calibration and integration of ...</ref> We still cannot answer basic questions that should be answerable by a simple query of the data, such as "what is the mortality rate according to

...atics search tasks through a [[workflow]] and a scenario. We conclude with a summary of ongoing evaluations, limitations, and future research. ...ut, health informatics is concerned with harnessing technology for finding new ways to help stakeholders work with health [[information]] to be able to pe

|title_full = VennDiagramWeb: A web application for the generation of highly customizable Venn and Euler di ...high-resolution Venn and Euler diagrams, we introduce ''VennDiagramWeb'': a web application for the widely used VennDiagram R package. ''VennDiagramWeb

|title_full = MASTR-MS: A web-based collaborative laboratory information management system (LIMS) for ...yke, J.; Nahid, A.; Barrero, R.; Roessner, U.; Likic, V.; Tull, D.; Bacic, A.; McConville, M.; Bellgard, M.

...erface and an application programming interface. This paper also describes a HTE approach to generating materials data and discusses the [[laboratory in ...cial intelligence to data-driven materials discovery is important, because new materials often underpin major advances in modern technologies. For example

'''Neuroinformatics''' is a research field encompassing the organization of [[neuroscience]] data by th ...ience data are highly interconnected and complex, and by itself represents a great challenge for scientists.

...a request for information (RFI). The idea is to allow users to incorporate a standardized specifications sheet in their comparison of various LIMS and o ...ffer questions applicable to most any laboratory informatics system, be it a LIMS or an [[electronic laboratory notebook|ELN]]. Section 1.5 covers funct

...BSI can be hosted locally or subscribed to yearly using the [[software as a service]] (SaaS) distribution method. ...2020}}</ref> SQUISH is accessed via subscription through the [[software as a service]] (SaaS) distribution method.

|authors = Rodriguez, N.; Pettit, J.-B.; Pezze, P.D.; Li, L.; Henry, A.; van Iersel, M.P.; Jalowicki, G.;<br />Kutmon, M.; Natarajan, K.N.; Tolnay Interoperability between formats is a recurring problem in systems biology research. Many tools have been develop

The increasing transformation of biodiversity into a data-intensive science has seen numerous independent systems linked and agg ...this paper is presented more in the style of a "how to guide" rather than a straightforward functional description. It is hoped that people will make u

...propose a framework to address these barriers, illustrating how OSH offers a route to rapid expansion of community‐driven conservation action. ...urrent barriers to the wide adoption of open‐source technology and propose a framework for addressing them.

...jpg|thumb|400px|The work of forensic science can occur both in and outside a specialized laboratory.]] ...Techniques |author=Tilstone, William J.; Savage, Kathleen A.; Clark, Leigh A. |publisher=ABC-CLIO |location=Santa Barbara, California |pages=307 |year=2

...lor-coding hazards, solvents, and reaction conditions. The interface links a database constructed from data extracted from PubChem, enabling the automat ...issn=1758-2946 |pmc=PMC5443717 |pmid=29086051}}</ref> In 2017, a survey at a [[Vendor:BioSistemika LLC|BioSistemika]] webinar revealed that only 7% of r

|editors = Ouzounis, Christos A. ...tories, and funding agencies can facilitate the process of sharing data in a meaningful way.

|title_full = Kadi4Mat: A research data infrastructure for materials science ...in the future. The source code of the project is publicly available under a permissive Apache 2.0 license.

...acilitating the user's ability to collaborate in the field and outreach to a wider audience. ...relying on cooperation within the entire field will be required, whereupon new models build directly on previous work, and all models are extensively vali

|title_full = Djeen (Database for Joomla!’s Extensible Engine): A research information management system for flexible multi-technology projec ...Information Management System (RIMS) for collaborative projects. Djeen is a user-friendly application, designed to streamline data storage and annotati

...n of practicum in the laboratory, students are expected to be able to find a concept, as well as foster scientific attitudes and critical thinking skill ...can be used to simplify the process of managing laboratory equipment with a user acceptance testing (UAT) value of 88% suitable for use.

...essful for microscopy images, the greater scientific community was lacking a domain-independent framework for format translation. ...main-specific open exchange formats, such as Bio-Formats’ OME-TIFF, within a unified environment.

...kground) without interfering with the display and behavior of the existing page. Data can be retrieved using the XMLHttpRequest object and API (application ...or exchanging data asynchronously between browser and server to avoid full page reloads.

...n sharing high-integrity, reproducible research for measurement science in a rapidly changing world. ...to the realm of managing the velocity and volume of big data. Furthermore, new strategic initiatives in the areas of [[artificial intelligence]] (AI) requ

...the smallest team. Even a software engineer working alone can benefit from a continuous integration build. ==Why is continuous integration a necessity?==

...ed on local servers and handled by individual researchers. Here we present a software named SaDA for storing, retrieving and analyzing data originated f ...olved in fresh water monitoring systems utilizing microarray technology as a state-of-the-art technology.

...box testers during the development process. In the world of Java, we have a number of popular options for the implementation of unit tests, with JUnit ...acceptance, functional, and possibly even some non-functional tests within a unit test framework.

...ing the analysis of most types of NGS applications from start-to-finish in a time-efficient and reproducible manner. ...both R and command-line software on local computers and computer clusters. A flexible sample annotation infrastructure efficiently handles complex sampl

...hompson, M.; van der Lei, J.; van Mulligen, E.; Velterop, J.; Waagmeester, A.; Wittenburg, P.; Wolstencroft, K.; Zhao, J.; Mons, B.}} ...Mons ([https://www.nature.com/articles/sdata201618/email/correspondent/c1/new must log in])

|title_full = A critical literature review of historic scientific analog data: Uses, succes |authors = Kelly, Julia A.; Farrell, Shannon L.; Hendrickson, Lois G.; Luby, James; Mastel, Kristen L

...= One tool to find them all: A case of data integration and querying in a distributed LIMS platform ...notation, and [[Data analysis|analysis]]. In 2011, our institution started a LIMS project named the Laboratory Assistant Suite with the purpose of assis

|title_full = Implement an international interoperable PHR by FHIR: A Taiwan innovative application ...ndard for those EMRs. However, the complication of implementing CDA became a barrier for many [[hospital]]s to realizing standard EMRs.

...al boundaries. At the University of Florida Health Science Center Library, a team of librarians undertook an assessment of the research data management ...their discipline or current research project and span the data lifecycle. A common theme in responses was the need for consistent data management train

...execute workflows. Each engine was created to address certain problems of a specific community, therefore each one has its advantages and shortcomings. ...have thus created a free and highly accessible way to design workflows on a desktop computer and execute them on high-performance computing resources.

...ge base. The database created through this cross-institution initiative is a model case for the further development of databases for other methods and [ ...nal |last=Nurk |first=G. |last2=Huthwelker |first2=T. |last3=Braun |first3=A. |last4=Ludwig |first4=Chr. |last5=Lust |first5=E. |last6=Struis |first6=R.

|title_full = From biobank and data silos into a data commons: Convergence to support translational medicine |contact = Email: a dot talhouk at ubc dot ca

|title_full = Molmil: A molecular viewer for the PDB and beyond |authors = Bekker, G.J.; Nakamura, H.; Kinjo, A.R.

|title_full = A survival guide for the rapid transition to a fully digital workflow: The Caltagirone example ...artment. Following step-by-step instructions towards the implementation of a paperless routine with more standardized and safe processes, every "analog"

...l = Developing a bioinformatics program and supporting infrastructure in a biomedical library ...field of [[bioinformatics]] has helped spur medical discoveries that offer a better understanding of the genetic basis of disease, which in turn improve

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> .... offers a free open-source version called Magento Open Source, as well as a commercial proprietary version, Adobe Commerce.

...omedcentral.com/articles/10.1186/s12859-021-04124-5/email/correspondent/c1/new Online form] ...according to each paper's citation counts, while "performance" is based on a comprehensive evaluation of the validation strategies used by papers in the

|title_full = Best practice recommendations for the implementation of a digital pathology workflow in the anatomic pathology laboratory by the Euro ...lly digital approach to histological workflow has been implemented in only a minority of [[Clinical laboratory|pathology laboratories]].

...be used to run the AI Toolkit. By using [[Jupyter Notebook]]s that run in a web-browser, the NOMAD data can be queried and accessed; [[data mining]], [ ...sn=2057-3960}}</ref>, which allows for the labeling of most of the data in a code-independent representation. The translation from the content of raw in

|authors = Armstrong, Edward M.; Bourassa, Mark A.; Cram, Thomas A.; DeBellis, Maya; Elya, Jocelyn; Greguska III, Frank R.;<br />Huang, Thomas ...ributes of the data. Such a workflow cannot scale if the research involves a massive amount of data or multi-variate measurements. With the upcoming NAS

...and calls for more narrowed down definitions of what has to be shared for a product to be called open source. This article contributes towards this eff ...e=4 |isbn=9783834969491 |doi=10.1007/978-3-8349-6949-1}}</ref> While these new practices are raising significant attention, they are still in their infanc

..., in response to the [[coronavirus disease 2019]] (COVID-19) [[pandemic]], a number of global efforts are underway to develop vaccines and therapeutics. '''Results''': In this study, a [[laboratory information management system]] (LIMS) has been adopted to sys

| developer = Roy Rosenzweig Center for History and New Media, George Mason University ...1.0 Drops Today |author=Scheinfeldt, Tom |publisher=Center for History and New Media |date=2 June 2009 |accessdate=31 March 2012}}</ref>

|title_full = A benchmarking analysis of open-source business intelligence tools in healthc ...althcare environment. Finally, a pervasive BI platform was developed using a real case in order to prove the tool's viability.

|title_full = Data sharing at scale: A heuristic for affirming data cultures ...ristic prompts cultural analysts to query the contexts of data sharing for a particular discipline, institution, geography, or project at seven scales:

...ftware was evaluated by Apache JMeter software, CRUD function testing, and a set of user feedback questionnaires. ...action feedback was excellent, with a score of 4.7 out of 5. We identified a total of 1,181 DEGs, including both upregulated (IFI6, LEF1, FANCI, CASC5,

...n of text analytics to extract and analyze material–application pairs from a large scientific corpus ...rnes, John J.; Randazzese, Lucien; Hartnett, Daragh P.; Freyman, Christina A.

...ing such a plan. This article provides 10 key recommendations for creating a DMSP that is both maximally compliant and effective. ...e data sharing into the routine conduct of research." The NIH adds that, "[a]ccordingly, we have included in the final DMS Policy an expectation that re

...; Abiola, Nadine; Adjé-Touré, Christiane; Puttkammer, Nancy; Perrone, Luca A. '''Purpose''': Côte d'Ivoire has a tiered [[public health laboratory]] system of nine [[Reference laboratory|r

...nd unauthorized data access at different cloud layers. This paper presents a novel multilevel classification model of different security attacks across ...: A model for enabling ubiquitous, convenient, on-demand network access to a shared pool of configurable computing resources (e.g., networks, servers, s

...and urgently needed. With this perspective, we give suggestions regarding a potential candidate for the rapid detection of the [[coronavirus disease 20 ...and Human-to-Human Transmission of a Novel Coronavirus in Vietnam |journal=New England Journal of Medicine |author=Phan, L.T.; Nguyen, T.V.; Luong, Q.C. e

|location_city = 265 Davidson Avenue, Suite #220, Somerset, New Jersey ...r rebrand most of its products with the "Sapphire" product line, featuring a configurable PC-based client-server architecture.<ref name="LVSSDI" /> In t

...right|300px|Female laboratory technician sitting at computer that displays a microarray; DNA microarray technology aids in gene expression analysis and ...computer science and information technology to the field of biology, with a primary goal of understanding biological processes. What sets it apart from

...he amount of supplemental light provided to current weather conditions and a crop’s light needs. Three simulations of LED lighting for growing lettuce ...ey publish (Watson et al. 2010); the emergence of this journal constitutes a critical step in engaging more scholars in solving the problem of our time.

...hnicians in their efforts. The concepts are important because they provide a functional foundation for understanding lab work and how that work is done ...operties (e.g., “How much lead is in this drinking water?”, “How much does a butterfly weigh?”). Still others may take some effort before you determin

...Information Protection Law, demonstrates China's great willingness towards a stronger data protection regime and more flexible regulatory mechanism. ...ely making personal data accessible should be considered to result in such a transfer, or whether this requires some active or automatic transmission of

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...e, plan, and analyze experiments, access relevant information, and develop new methods in the areas of synthetic chemistry, analytical chemistry, and proc

...emistry researchers to build their own databases of digital information as a prerequisite for the detailed, systematic investigation and evaluation of c ...ible with minimal effort. The development of the Chemotion ELN resulted in a system with modern infrastructure that offers intelligent support of academ

..., D.; Brooksbank, Carth; Gaeta, Bruno; Morgan, Sarah L.;<br />Pauley, Mark A.; Rosenwald, Anne; Rustici, Gabriella; Sierk, Michael; Warnow, Tandy; Welch ...tario Institute for Cancer Research, Wellcome Genome Campus, University of New South Wales, University<br />of Nebraska at Omaha, Georgetown University, U

|title_full = Support Your Data: A research data management guide for researchers |authors = Borghi, John A.; Abrams, Stephen; Lowenberg, Daniella; Simms, Stephanie; Chodacki, John

'''Background''': Healthcare [[information]] professionals play a key role in closing the knowledge gap between medical research and clinical '''Methods''': A survey was distributed to healthcare information professionals via professi

...give proper attribution and 2. distribute the work only under the same or a similar license. ...lves charged with the mission of finding software for their lab. It can be a daunting proposition, and there are few at least partially objective refere

...= The evolution, use, and effects of integrated personal health records: A narrative review Objective: To present a summarized literature review of the evolution, use, and effects of Personal

....; Roe, Greg R.;<br />Podduturi, Nikhil R.; Tanaka, Forrest; Hilton, Jason A.; Cherry, J. Michael ...iples and philosophy used to define the ENCODE metadata in order to create a metadata standard that can be applied to diverse assays and multiple [[Geno

...ST will further catalyze adoption and consolidate the schema by addressing new stakeholder requirements. ...or Guides in Metrology |publisher=Joint Committee for Guides in Metrology |page=34 |edition=3rd |year=2012}}</ref> Hence, PIDINST chose to address the prob

|authors = Bianchi, V.; Ceol, A.; Ogier, A.G.; de Pretis, S.; Galeota, E.; Kishore, K.; Bora, P.; Croci, O.; Campaner, ...trieve [[information]] from a LIMS database, manages data analyses through a simple GUI, outputs data in standard locations and allows the complete trac

...ctionality of this technique, this screening procedure is executed against a selected class of applications. ...etailed examination and comparison, for the purpose of this initial survey a much simpler assessment protocol will serve. While there is no single "corr

|title_full = Epidemiological data challenges: Planning for a more robust future through data standards ...public often differ drastically among institutions. As a result, there is a strong need for better data sharing practices. This paper identifies, in de

|title_full = MendeLIMS: A web-based laboratory information management system for clinical genome sequ ...ration DNA sequencing require the ability to select and track samples from a large population of patients through many experimental steps. With the numb

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...stem was originally built to process neuroimaging data, with a goal to be "a system that is flexible enough to accommodate all types of scientific data

...ke phrases. The retrieval routine is based on n-gram textual analysis with a sequential execution of various ‘accept and reject’ rules with taking i ...ecision (P), recall (R) and F1-measure, which are calculated manually from a limited set of documents (the full set of text abstracts belonging to five

...variety of powerful tools designed to process petascale datasets, provide a compelling solution to these ever increasing demands. ...several whole genome datasets including the U87MG cell line. We also used a glioblastoma multiforme tumor/normal pair to both profile performance and p

|title_full = PCM-SABRE: A platform for benchmarking and comparing outcome<br />prediction methods in ...critical stages in the process of knowledge discovery. There is a need for a platform that would allow researchers to replicate previous works and to te

...full = Promoting data sharing among Indonesian scientists: A proposal of a generic university-level research data management plan (RDMP) ...ement|data management]]. This paper mainly describes our recommendation of a research data management plan (RDMP) at the university level. This paper is

...ailyglobe2/308/business/MIT_to_create_digital_library+.shtml |title=MIT to create digital library |author=Howe, Peter J. |publisher=The Boston Globe |archive | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''ADempiere''' or '''ADempiere ERP''' is a free open-source enterprise resource planning (ERP) application.

'''CliniSys, Inc.'''—doing business as '''Clinisys'''—is a U.S.-based subsidiary of parent company Roper Technologies, Inc. and was pr ...ite showed an image indicating the integration was complete, revealing the new name as Sunquest Mitogen.<ref name="UNIConArch">{{cite web |url=http://www.

'''Background:''' Cancer immunotherapy has recently entered a remarkable renaissance phase with the approval of several agents for treatm ...identified from NGS analysis), and scanned whole-slide images. It features a genome browser as well as access to several instances of the bioimage manag

..., Guy; Nation, Brian (eds.) |publisher=Oxford University Press |year=2011 |page=3 |isbn=9780199574346 |accessdate=18 April 2014}}</ref> ...olving sterile body cavities (peritoneal, pleural, and cerebrospinal), and a wide range of other body sites. It is usually used to aid in the diagnosis

...nstitutional ELN-LIMS deployment: Highly customizable ELN-LIMS platform as a<br />cornerstone of digital transformation for life sciences research insti ...face, as well as how our experience leads us to support the creation of a new position in the research group: the laboratory data manager.

|affiliations = New York University School of Medicine ...fied research [[Information management|data management]] (RDM) training as a need in biomedical [[research]]. Despite the wealth of libraries offering R

...up to six characters long. Thus, major categories are designed to include a set of similar diseases. ...pdates |publisher=WHO |accessdate=29 April 2013}}</ref> The ICD is part of a "family" of guides that can be used to complement each other, including als

|title_full = Towards a risk catalog for data management plans ...able to DMPs and transferable to multiple institutional constellations. As a result, the effort for integrating risk management in data management plann

...of ethical guidelines and practice standards, CI remains underdeveloped as a field of practice.<ref name="StoeckerIsComm05" /> ...nd society at the community level. Therefore, this document also serves as a complement to the codes of ethics and standards of practice for community-c

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...veloped by OTRS AG and the OTRS Group. The company originally also offered a free open-source version called "((OTRS)) Community Edition" but discontinu

...55&limit=5&offset=5 |title=Project News for opentaps open source ERP+CRM - Page 2 |publisher=SourceForge |accessdate=13 January 2013}}</ref><ref name="otOS | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->

...aboratory information system requirements to manage the COVID-19 pandemic: A report from the Belgian national reference testing center ...s in parallel to standard routine testing since the start of the outbreak. A LIS implementation team dedicated to developing tools to remove [[workflow]

...h varied therapeutic portfolio research goals in a non-commercial setting, a cost-effective, extendable [[laboratory information management system]] (LI ...in customizing it for their unique workflows. (Instructions for exploring a deployed version of Optide-Hunter can be found on the [https://www.labkey.c

...meroun.jpg|thumb|380px|right|Hospitals and labs around the world depend on a laboratory information system to manage and report patient data and test re ...ments, tracking those orders, and then recording the results, typically to a searchable database.<ref name="biohealth">{{cite web |url=http://www.biohea

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...his software has since evolved, having been rewritten in Java Spring, with new technology and features being added.

...Laboratories.JPG|thumb|400px|right|Laboratories around the world depend on a LIMS to manage data, assign rights, manage inventory, and more.]] ...e=04 March 2016 |accessdate=12 March 2024}}</ref> The features and uses of a LIMS have evolved over the years from simple [[sample]] tracking to an inte

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...eding to know a programming language. The modular platform is built around a scalable conceptual database structure, with the advantage of being indepen

[[File:PKU-test.jpg|thumb|300px|Blood samples are collected from a newborn baby in Sweden for the national PKU registry biobank.]] ...: between books and clinical trials |author=Kauffmann, F.; Cambon-Thomsen, A. |journal=JAMA |volume=299 |issue=19 |pages=2316–2318 |year=2008 |doi=10.

...esPg2">{{cite web |url=https://community.openclinica.com/node/5500/release?page=1 |title=Releases for Download OpenClinica |publisher=OpenClinica, LLC |acc | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->

...formation, Part II: Assessing the impact of a turnaround time dashboard at a high-volume laboratory ...reported using Microsoft Excel. A focus group session was used to populate a cause and effect diagram.

|title_full = Privacy preservation techniques in big data analytics: A survey |authors = Rao, P. Ram Mohan; Krishna, S. Murali; Kumar, A.P. Siva

...isher=CRC Press |pages=352 |year=2016 |isbn=9781420025309}}</ref> However, a QMS should not be confused with product and service standards, which tend t ...https://asq.org/quality-resources/quality-management-system |title=What Is A Quality Management System (QMS)? ISO 9001 & Other Quality Management System

...ce the images occupy often several gigabytes and cannot be fully opened in a computer’s memory. Moreover, there is no standard format. Therefore, most ...when applicable, to standard software. A statistical study of the cells in a tissue sample from an oligodendroglioma was performed on an average laptop

|company_type = [http://en.wikipedia.org/wiki/S.A._(corporation) Société Anonyme] ...ive design, consumer goods, machinery, and shipbuilding. IBM itself became a customer in the mid 1980s and deployed CATIA in its engineering and manufac

...aS]], [[Database as a service|DBaaS]], [[Desktop virtualization#Desktop as a service|DaaS]] ...kbone |publisher=Linode |accessdate=04 August 2023}}</ref> Linode provides a variety of different products and services, representing virtual computing,

|title_full = Design, implementation and operation of a multimodality research imaging informatics repository ...uted by the system. Imaging data are annotated with meta-data according to a study-centric data model and, therefore, scientific users can find, downloa

...|url=https://www.liferay.com/web/michael.young/blog/-/blogs/312439 |title=A walk down memory lane |author=Young, Michael |publisher=Liferay, Inc |date= | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->

'''LIMSpec''' is a [[Laboratory|laboratory-focused]], standards-and-regulations-based user req ...te collection of requirements and questions, and export that collection in a variety of formats.

...rough the design process. Initial test executions show the promise of such a system in addressing the enormous shortage of cybersecurity experts current ....7245322}}</ref><ref name="Wang_inVideo14">{{cite journal |title=inVideo — A novel big data analytics tool for video data analytics |journal=Proceedings

...iagnosis is a largely unexplored area where reported studies only provided a qualitative insight into the subject. Uncovering and quantifying pathology ...lide digital pathology imaging with multiscale gaze-tracking technology to create web-based interactive pathology educational atlases and to datamine visual

[[File:Hospital room ubt.jpeg|thumb|340px|right|A standard hospital room in Denmark]] ...oday |author=Lovoll, Odd Svere |publisher=U of Minnesota Press |year=1998 |page=192 |isbn=9780816628322}}</ref>

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> The '''Sakai Collaboration and Learning Environment''' or '''Sakai CLE''' is a free open-source education-based course management and collaboration softwa

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''Movable Type''' is a blogging and content management system developed by the company Six Apart.

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...d commercial versions (CloverETL Designer, Server, and Cluster) as well as a free open-source Community edition.

...ctionality of this technique, this screening procedure is executed against a selected class of applications. ...FLOSS]] applications. The consistency of their recommendations may provide a more useful guide for an initial survey of FLOSS applications.

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''nuBuilder''' is a free web-based open-source web application builder.

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''Bika LIMS''' is a free open-source [[laboratory information management system]] (LIMS) soluti

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...nment'') is a free open-source e-learning software platform, also known as a course management system, learning management system, or virtual learning e

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''CONNECT''' is a [[health informatics]] "software solution that organizations can use to sec

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instr

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...hieve this we need to create a robust user management system and establish a cloud environment."<ref name="sNKickDesc" /> After meeting their funding go

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''BIRT''' is a free open-source "technology platform to create data visualizations and reports that can be embedded into rich client and w

|authors = Cecchetti, Alfred A.; Bhardwaj, Niharika; Murughiyan, Usha; Kothakapu, Gouthami; Sundaram, Uma ...need an arsenal of analytics and data science tools with the foundation of a centralized [[data warehouse]] to transform healthcare data into actionable

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...group management software. It is available in a free Community Edition and a fee-based commercial "EGroupware Enterprise Line" edition.

| frequently updated = Yes<!-- Release version update? Don't edit this page, just click on the version number! --> ...ad later recognized despite the benefits, "a major drawback in that it has a dependency on the proprietary and closed source FileMaker application."<ref

| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> '''OpenCart''' is a free open-source eCommerce application most often used to create and manage online storefronts.

...vedate=25 November 2013 |accessdate=02 March 2015}}</ref> Poplar created a new division of its company called "Labcore" to further develop the solution. ...170301112014/http://www.lab-core.com/create-complex-data-packages-5/|title=Create Complex Data Packages: Created in Seconds |publisher=Poplar Solutions, LLC